Annotate missing from task pipeline, fails when phmmer,fcp not found

marbl / metAMOS

A metagenomic and isolate assembly and analysis pipeline built with AMOS

http://marbl.github.io/metAMOS

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Closed treangen closed 13 years ago

treangen commented 13 years ago

Need to add Annotate to task list, check for called programs in PATH/metAMOS PATH, if not there, exit.

skoren commented 13 years ago

Annotate is back in the pipeline. Also check and find executables for PHMMER, blast, or FCP (as required)