search

marbl / parsnp

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Other
123 stars 25 forks source link

conda for the latest ParSNP version? #143

Closed ajkarloss closed 6 months ago

ajkarloss commented 6 months ago

Hi, If you are managing the parsnp conda, could you update it?

bkille commented 6 months ago

Yup! There are some minor issues with the build that should be fixed in 2.0.2

I'll close this issue once conda is updated

ajkarloss commented 6 months ago

Thanks. Do you have any timeline or?

bkille commented 6 months ago

Tomorrow at the latest, but hopefully today.

ajkarloss commented 6 months ago

Thanks a lot

bkille commented 6 months ago

Hi @ajkarloss, thanks for waiting. The release is finally available on conda. Please reopen the issue if you have any problems obtaining it.