Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
-->Running Parsnp multi-MUM search and libMUSCLE aligner..
/bin/bash: /tmp/_MEIkrzLEE/libtinfo.so.5: no version information available (required by /bin/bash)
ERROR
The following command failed:
/tmp/_MEIkrzLEE/parsnp parsnp_out/parsnpAligner.ini
Please veryify input data and restart Parsnp. If the problem persists please contact the Parsnp development team.
ERROR
-->Running Parsnp multi-MUM search and libMUSCLE aligner.. /bin/bash: /tmp/_MEIkrzLEE/libtinfo.so.5: no version information available (required by /bin/bash) ERROR The following command failed: