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marbl / parsnp

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
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Build binary release on older glibc? #77

Closed tseemann closed 4 years ago

tseemann commented 4 years ago

Are you able to build the binary lease Parsnp-Linux64-v1.5.0.tar.gz on an older system so it works on more systems?

It doesn't work on RHEL 7.x etc

Centos 6 is a common choice here that people use.

./parsnp: /lib64/libm.so.6: version `GLIBC_2.27' not found (required by ./parsnp)
./parsnp: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by ./parsnp)
./parsnp: /lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by ./parsnp)
./parsnp: /lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by ./parsnp)
./parsnp: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by ./parsnp)
bkille commented 4 years ago

@tseemann Thanks for going through all of this so thoroughly! I've updated the binary package to work w/ older versions. Let me know if that still doesnt fix those dependencies.