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marbl / parsnp

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
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setup.py still has version=1.0 in it #78

Closed tseemann closed 4 years ago

tseemann commented 4 years ago 
setup(
      name = "ParSNP",
      version = "1.0",
      author = "Todd J. Treangen, Brian Ondov & Adam Phillippy",
      author_email = "treangen+ParSNP@gmail.com",
      description = ("Rapid bacterial core genome alignment and WGST"),
      license = "BSD",
bkille commented 4 years ago

@tseemann Thanks for going through all of this! I took a look and it doesn't seem like that file has been used in a long time so I've removed it.