Closed fahadkhokhar closed 3 years ago
Hi @fahadkhokhar, sorry for the delay. Can you elaborate on this error a bit more? Are you using Parsnp to align a group of genomes and noticing that the alignment doesn't report the R717L variant?
Hi, this seems to have been resolved in the latest update from Pathogenwatch.
Hello! Uploading genomes to PathogenWatch - it seems that the azithromycin resistance mutation acrB R717L in S. Typhi is not being picked up. The R717Q mutation is correctly identified.