Open fubar2 opened 2 months ago
brianwalenz
commented
2 months ago Hi Ross- Hopefully I got all the correct boxes checked and i's properly dotted.
Release is tagged as 'v1.0' with a maintenance branch 'v1.0-maintenance'. Release itself is at https://github.com/marbl/seqrequester/releases/tag/v1.0
fubar2
commented
2 months ago Hi @brianwalenz: Thank you!
Will let you know how it goes using the URI https://github.com/marbl/seqrequester/archive/refs/tags/v1.0.tar.gz
fubar2
commented
2 months ago Hi @brianwalenz,
Bioconda lint is now satisfied with the URI, but of course it's never that simple....
Currently a git clone will compile, but neither that new release tarball nor the code download zip will compile, so bioconda build for the release tarball fails.
Fetching submodule 'utility'
- fatal: not a git repository (or any of the parent directories): .git
make: ./utility/src/version.pl: No such file or directory
Makefile:444: *** Failed to create version.H, possibly missing the 'meryl-utility' submodule. Stop.Fix is to add the missing .git directory to the release I think - at least it compiles normally if I add a copy here.
Hello @brianwalenz and @arangrhie !
After a talk Arang gave to the VGP Galaxy group, they would like to use this package for workflows, but that means creating a Conda recipe to use in a new tool.
I have some good news: I've got a conda recipe working for seqrequester - using
git-urlas the source. Bioconda is the right place for this package but the bad news is that lint fails. For reproducibility, Bioconda insists on a stable long term archive URI and won't even allow a specific revision git clone.At present, the github tags zip/tgz link to empty files - if you could please make a github release, I can fix the recipe to download it from a stable URI and get your package into Bioconda if that is ok?
Thanks!