search

marbl / verkko

265 stars 27 forks source link

Error in rule combineConsensus: #265

Closed wsd2345 closed 1 week ago

wsd2345 commented 2 weeks ago

Error in running hifi, ont, hi-c data. Can you help me check? 微信截图_20240620221309

skoren commented 2 weeks ago

To help we need more details on your run. What is the version of verkko you're running? What is the command and input data you used? What's the contents of combineConsensus.* and screen-assembly.*

wsd2345 commented 2 weeks ago

version : verkko2.1

command : verkko -d verkko_G30136 --hifi /public1/home/scf1179/cgq/genome/ccs-test.fastq.gz --nano /public1/home/scf1179/cgq/genome/ont-test.fastq.gz --hic1 /public1/home/scf1179/cgq/genome/Unknown_BB742-02H0001_good_1.fq.gz --hic2 /public1/home/scf1179/cgq/genome/Unknown_BB742-02H0001_good_2.fq.gz

data : hifi、ont、hi-c

The file is as follows file.zip

skoren commented 2 weeks ago

Looks like you ran out of space:

% cat combineConsensus.err
cp: error writing ‘../7-consensus/unitig-popped.fasta’: Disk quota exceeded

Once you have more space, you should be able to continue with the same command. It should be safe to delete the 0-correction folder to save space as well.

wsd2345 commented 2 weeks ago

thank you