Move Paper to (R?) Markdown from Overleaf

[marcdotson]

I'll move the paper from Overleaf to (R?) Markdown. Would you prefer it just be in Markdown, @dgmiller? I think it'll be easiest to just have this as the README in the Paper directory.

[marcdotson]

@dgmiller I began the transfer (directly to the master, apologies, but there wasn't a possible merge issue for the initial set-up). Everything from overleaf is in /Paper/README.Rmd, although not all of it knit to /Paper/README.md. I was modifying the existing latex code up to the final section.

Here's a list of syntactical things that we (I) need to figure out. Feel free to edit this if there are other things to consider.

• YAML header for authors and other information.
• Using figures (and the /Figures directory) with references.
• Bibliography and citations.
• Tables, parameterized to work with R output.
• Including code that doesn't run.

I'll document this in the ra-training repo for future reference as we (I) figure it out. :)

[marcdotson]

@dgmiller I finished moving the paper from Overleaf, so please use /Paper/README.Rmd for your brain dump rather than Overleaf. One outstanding issue is the table creation, which also highlights one of the primary reasons to do this in R Markdown:

• Tables, parameterized to work with R output.

Essentially, we don't want to put numbers in manually, we want to reference a data frame that can be updated with a new model run, so the paper itself can be automatically updated. Do you have any qualms about this output also existing in /Figures since it's used to create a figure and should simply be a summary of model output?

• R Markdown
• gt Package

[marcdotson]

Moved over. Transferring outstanding issues WRT R Markdown syntax to ra-training.