marcelauliano / MitoHiFi

Find, circularise and annotate mitogenome from PacBio assemblies
MIT License
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libexec/lmod: No such file or directory #100

Closed ghost closed 2 months ago

ghost commented 3 months ago

Hello,

Thank you for this piece of software. I have run into an issue with running mitifinder

I installed the software using singularity pull MitoHiFi.sif docker://ghcr.io/marcelauliano/mitohifi:master

when I use singularity run MitoHiFi.sif I receive the following error. bash: /usr/share/lmod/lmod/libexec/lmod: No such file or directory

My understanding of singularity containers is they have all the necessary software to run. Am I misunderstanding that this should be present in the image?

Consequently, when I try to run mitofinder, I receive the following message.

libuuid.so: cannot open shared object file: No such file or directorylibuuid.so: cannot open shared object file: No such file or directorylibuuid.so

EDIT: I was not able to resolve the issue with the Docker image, but was able to create conda environment with the necessary software to run MitoHifi.