AttributeError: 'Seq' object has no attribute 'defined'

[ramaniak]

Hello, I am getting the following error when running the tool on a human sample.
I don't see any prior reference to this and was wondering if you have any advice on how to proceed.

Traceback (most recent call last):
  File "/opt/MitoHiFi/src/mitohifi.py", line 567, in <module>
    main()
  File "/opt/MitoHiFi/src/mitohifi.py", line 492, in main
    plot_annotation.plot_annotation("final_mitogenome.gb", "final_mitogenome.annotation.png")
  File "/opt/MitoHiFi/src/plot_annotation.py", line 38, in plot_annotation
    graphic_record = MyCustomTranslator().translate_record(in_gb)
  File "/usr/local/lib/python3.6/dist-packages/dna_features_viewer/BiopythonTranslator/BiopythonTranslatorBase.py", line 89, in translate_record
    sequence=str(record.seq) if record.seq.defined else None,
AttributeError: 'Seq' object has no attribute 'defined'```

[sbassi]

I submitted a patch where I delete the defined attribute

[sbassi]

the patch was submited to other repo, because the issue is in another script that is being called from MitoHIFI, but the error is in DnaFeaturesViewer Here is the patch https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer/pull/89