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marcelauliano / MitoHiFi

Find, circularise and annotate mitogenome from PacBio assemblies
MIT License
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ValueError: max() arg is an empty sequence #70

Closed zhyx6511 closed 10 months ago

zhyx6511 commented 10 months ago

dear Marcela and your team，I am running the mitohifi pipeline with an error as shown in the screenshot below, I have searched a lot about the cause and solution of this error but with no luck at all, and had to ask you for advice as well. I look forward to your reply, and I will be endlessly grateful.Thank you very much. Traceback (most recent call last): File "/mnt/biosoft_1/MitoHiFi-master/src/mitohifi.py", line 557, in main() File "/mnt/biosoft_1/MitoHiFi-master/src/mitohifi.py", line 296, in main tRNA_ref = fetch.get_ref_tRNA() File "/mnt/biosoft_1/MitoHiFi-master/src/fetch.py", line 48, in get_ref_tRNA reference_tRNA = max(tRNAs, key=tRNAs.get) ValueError: max() arg is an empty sequence

marcelauliano commented 10 months ago

Hi, if you are running a local installation, you will need to make sure everything is installed correctly. It seems to me like an annotation error. Make sure mitofinder or mitos are installed correctly. Apart from that, we advise people to use the docker container version with docker or singularity