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marcelauliano / MitoHiFi

Find, circularise and annotate mitogenome from PacBio assemblies
MIT License
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ModuleNotFoundError: No module named 'parse_blast' #74

Closed AlcaArctica closed 9 months ago

AlcaArctica commented 9 months ago

Hi, I installed the mitohifi conda env (with mamba env create -n mitohifi2 -f mitohifi_env.yml) but I still get some import error

conda activate mitohifi2
python mitohifi.py -r ilDeiPorc1.reads.100.fa -f OQ694980.1.fasta -g OQ694980.1.gb -t 4 -o 5
Traceback (most recent call last):
  File "mitohifi.py", line 14, in <module>
    import parse_blast
ModuleNotFoundError: No module named 'parse_blast'

What do I need to install to solve this error?

marcelauliano commented 9 months ago

Hi sorry, we don't have the capacity to help with problems outside of of the docker container. But it seems to me you are not executing the script where the modules are? Good luck

AlcaArctica commented 9 months ago

Yes, that was indeed the problem. I should not have moved the script. Sorry for the hassle.