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marcelm / cutadapt

Cutadapt removes adapter sequences from sequencing reads
https://cutadapt.readthedocs.io
MIT License
502 stars 126 forks source link

FYI: Macos-14 runners available for M1 macs. #770

Closed rhpvorderman closed 2 weeks ago

rhpvorderman commented 3 months ago

https://github.com/orgs/community/discussions/102846

Also supported by CIBuildWheel: https://cibuildwheel.pypa.io/en/stable/#usage

I thought this might be of interest to you, to get native builds out.

As for the downstream dependencies: dnaio should be possible as well. Xopen is pure python, python-isal will not be able to build as ISA-L does not support it yet, and zlib-ng should handle it fine without issue. So that will require some twiddling in the xopen requirements (if I now the proper platform.architecture flag for macos arm64).

marcelm commented 3 months ago

Yeah, I saw that, but it is quite low on my to-do list. I’ll try to get this done for the next release.

marcelm commented 2 months ago

dnaio PR: https://github.com/marcelm/dnaio/pull/134