issues
search
marcelm
/
dnaio
Efficiently read and write sequencing data from Python
https://dnaio.readthedocs.io/
MIT License
62
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Test limited API
#149
marcelm
opened
2 weeks ago
4
Fix failing test on Windows with Python 3.11.9+
#148
marcelm
closed
2 weeks ago
7
Support Python 3.13; drop support for Python 3.8
#147
marcelm
closed
2 weeks ago
1
Compressed (.gz) Writers need to be manually closed
#146
mgperry
opened
3 weeks ago
13
Ignore complex mypy issue
#145
rhpvorderman
closed
1 month ago
1
s/d/_core.pyx: pedantic typo caught by linting.
#144
emollier
closed
1 month ago
3
SequenceRecord.__getitem__ should support slicing for certain BAM tags.
#143
rhpvorderman
opened
1 month ago
0
SequenceRecord BAM tags should be stored to FASTQ as well
#142
rhpvorderman
opened
1 month ago
0
Allow chunking uBAM
#141
rhpvorderman
closed
3 weeks ago
6
Chunking for uBAM
#140
rhpvorderman
opened
1 month ago
2
Properly convert missing qualities in BAM
#139
rhpvorderman
closed
1 month ago
9
installation from source with `pip install` fails
#138
boegel
closed
3 months ago
2
Update bioconda-recipe to support osx-arm64
#137
isaacovercast
closed
3 months ago
1
dnaio.exceptions.UnknownFileFormat
#136
wook2014
opened
3 months ago
3
Decode BAM sequence with less code. Dispatch function at dynamic link time rather than at run time.
#135
rhpvorderman
closed
4 months ago
7
Build macOS arm64 wheels
#134
marcelm
closed
7 months ago
1
Rewrite ascii check to allow compiler auto vectorization
#133
rhpvorderman
closed
7 months ago
2
_Py_NegativeRefcount error
#132
bistace
closed
7 months ago
7
Use dispatch rather than rely on separate compile commands for SSSE3 bam parser
#131
rhpvorderman
closed
7 months ago
2
Run tests on the M1 macOS runner
#130
marcelm
closed
9 months ago
1
Extended BAM support
#129
rhpvorderman
opened
10 months ago
12
Add citation info
#128
marcelm
closed
10 months ago
0
How to cite dnaio in a manuscript?
#127
DongzeHE
closed
10 months ago
2
Highlight BAM support
#126
rhpvorderman
closed
11 months ago
1
Using memcmp with a fixed length leads to very efficient assembly
#125
rhpvorderman
closed
11 months ago
0
Support chunking of paired-end FASTA
#124
marcelm
closed
11 months ago
3
Highlight xopen's Zstandard support when optionally installed
#123
bede
closed
1 year ago
8
Add asan tox environment for testing memory errors
#122
rhpvorderman
closed
1 year ago
0
Add some tests
#121
marcelm
closed
1 year ago
1
Improve type hints
#120
marcelm
closed
1 year ago
1
Bump cibuildwheel so that wheels for Python 3.12 get built
#119
marcelm
closed
1 year ago
0
Typing warnings from mypy
#118
fjossandon
closed
1 year ago
7
Bump various versions
#117
marcelm
closed
1 year ago
1
Add a simple BAM parser to dnaio
#116
rhpvorderman
closed
1 year ago
14
Simplify ASCII check
#115
rhpvorderman
closed
1 year ago
2
Version 1.0
#114
rhpvorderman
closed
1 year ago
3
Add build.os key to Read the Docs configuration
#113
marcelm
closed
1 year ago
1
Get rid of setup.cfg, use pyproject.toml instead
#112
marcelm
closed
1 year ago
0
check quality score integrity
#111
rhpvorderman
closed
1 year ago
1
Add id and comment
#110
rhpvorderman
closed
1 year ago
2
Add ubam support
#109
rhpvorderman
closed
11 months ago
11
Use a newline index for FastqIter
#108
rhpvorderman
closed
1 year ago
10
FastqFormatError, while reading in chunks
#107
arunhpatil
closed
1 year ago
5
Fix buffer filling up on incomplete paired FASTQ
#106
marcelm
closed
1 year ago
1
Check for most common case where there is no second header
#105
rhpvorderman
closed
1 year ago
5
Test detect format
#104
marcelm
closed
2 years ago
2
ResourceWarnings
#103
marcelm
closed
2 years ago
3
Bump cibuildwheel
#102
marcelm
closed
2 years ago
0
Avoid running CI jobs twice
#101
marcelm
closed
2 years ago
1
Let’s ignore __repr__ functions for coverage percentages
#100
marcelm
closed
2 years ago
1
Next