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marcnol / pyHiM

Multiplexed DNA-FISH data analysis pipeline
GNU Lesser General Public License v3.0
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Update routine names #178

Closed XDevos closed 9 months ago

XDevos commented 9 months ago

makeProjections --> project
alignImages --> register_global appliesRegistrations --> register_global alignImages3D --> register_local segmentMasks --> mask_2d (call segmentMasks only with DAPI/mask images) segmentMasks --> localize_2d (call segmentMasks only with barcode images) segmentMasks3D --> mask_3d segmentSources3D --> localize_3d filter_localizations register_localizations build_traces build_matrix