trace_to_matrix.py - missing module

[MarionBardou]

I just did a git pull on development and I think a dependency changed.

Now, when I try to run "trace_to_matrix.py", I get the following error : " (pyHiM_refact) bardou@darwin:/mnt/grey/DATA/users/Marion/Hi-M_analysis_Droso_brain/rut/non_OK107/3D_projected/Combined_exp_32_53_filt/15bc_min$ trace_to_matrix.py --help Traceback (most recent call last): File "/home/bardou/Repositories/pyHiM/src/postProcessing/trace_to_matrix.py", line 23, in from matrixOperations.build_matrix import BuildMatrix File "/home/bardou/Repositories/pyHiM/src/matrixOperations/build_matrix.py", line 39, in from core.parameters import get_dictionary_value File "/home/bardou/Repositories/pyHiM/src/core/parameters.py", line 14, in from dataclasses_json import CatchAll, LetterCase, Undefined, dataclass_json ModuleNotFoundError: No module named 'dataclasses_json' "

[marcnol]

Xavier sent an email around to explain how to install this new modules... perhaps Xavier should also put it somewhere else in the repo?

On Wed, Oct 4, 2023 at 5:57 PM MarionBardou @.***> wrote:

I just did a git pull on development and I think a dependency changed.

Now, when I try to run "trace_to_matrix.py", I get the following error : " (pyHiM_refact) @.***:/mnt/grey/DATA/users/Marion/Hi-M_analysis_Droso_brain/rut/non_OK107/3D_projected/Combined_exp_32_53_filt/15bc_min$ trace_to_matrix.py --help Traceback (most recent call last): File "/home/bardou/Repositories/pyHiM/src/postProcessing/trace_to_matrix.py", line 23, in from matrixOperations.build_matrix import BuildMatrix File "/home/bardou/Repositories/pyHiM/src/matrixOperations/build_matrix.py", line 39, in from core.parameters import get_dictionary_value File "/home/bardou/Repositories/pyHiM/src/core/parameters.py", line 14, in from dataclasses_json import CatchAll, LetterCase, Undefined, dataclass_json ModuleNotFoundError: No module named 'dataclasses_json' "

— Reply to this email directly, view it on GitHub https://github.com/marcnol/pyHiM/issues/185, or unsubscribe https://github.com/notifications/unsubscribe-auth/AACTN7NJYFFPMYE2SCWFMVDX5WBQNAVCNFSM6AAAAAA5S3SMJKVHI2DSMVQWIX3LMV43ASLTON2WKOZRHEZDMNJQG44TANA . You are receiving this because you are subscribed to this thread.Message ID: @.***>

-- |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Marcelo Nollmann CNRS Research Director e-mail: @., @. website: http://www.nollmannlab.org/

Center for Structural Biology, INSERM/CNRS, Univ de Montpellier 60 Rue de Navacelles, 34090 Montpellier France

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[MarionBardou]

I forgot about that email. It is my fault. Sorry for the disturbance

[XDevos]

For the future and others: In this error case, you usually have to do a "pip install " like pip install dataclasses_json.