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marcnol / pyHiM

Multiplexed DNA-FISH data analysis pipeline
GNU Lesser General Public License v3.0
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Bug (build_traces) - core dumped when create 3D KDTree #202

Open XDevos opened 8 months ago

XDevos commented 8 months ago

2023 Experiment_101 Deconvolved 019_ROI

$ rois detected: 1
Plotting barcode localization map for ROI: 19
$ Saved output table as /mnt/grey/DATA/rawData_2023/Experiment_101_Olivier_Marie_Christel_ND3_RAMM_PDX1LR/Deconvolved/019_ROI/buildsPWDmatrix/Trace_2D_barcode_mask:mask0_ROI:19.ecsv
$ Successfully loaded barcode localizations file: /mnt/grey/DATA/rawData_2023/Experiment_101_Olivier_Marie_Christel_ND3_RAMM_PDX1LR/Deconvolved/019_ROI/segmentedObjects/segmentedObjects_3D_barcode.dat
Number of barcodes read from barcode_map: 25
Unique Barcodes detected: [  1   2   3   7   8   9  10  11  12  13  14  15  16  17  18  19  20  21
  23  24  25  26  27  28 639]
--------------------------------------------------------------------------------
> Starting spatial clustering for 1 ROI in 3 dimensions
$ Processing ROI# 19
> Creating KDTree for 3 dimensions
Segmentation fault (core dumped)