Doc (localize_3d) - Describe the spot-stitching approach

[XDevos]

Optional: add support for the "spatial genome aligner" from the Ren lab https://github.com/b2jia/jie

[XDevos]

• How does the software handle the detection of multiple foci in the same image?
• Does it use the closest spot?
• The brightest spot?
• Some weighted combination of these?

[XDevos]

Optional: add support for the "spatial genome aligner" from the Ren lab https://github.com/b2jia/jie

write a script that converts our trace tables to their format

[XDevos]

It's describe in the paper but there isn't official format from Ren Lab so we can't export your data in their formats.