Open marcnol opened 2 weeks ago
When using mask_cellpose.py the output registered segmented file will be saved with extension:
mask_cellpose.py
...3d_registered_3Dmasks.npy
but builds_traces will expect a segmented file with extension ..._3Dmasks.npy.
builds_traces
..._3Dmasks.npy
This means that by default the stardist segmented image will always be used unless the user changes the name by hand?
When using
mask_cellpose.pythe output registered segmented file will be saved with extension:...3d_registered_3Dmasks.npybut
builds_traceswill expect a segmented file with extension..._3Dmasks.npy.This means that by default the stardist segmented image will always be used unless the user changes the name by hand?