Open GoogleCodeExporter opened 8 years ago
Did you ever receive a response on how to fix this issue? I just ran into it
and I believe that it is due to an empty breakpoint.fa file being supplied to
bowtie. I have run multiple other fusion finding programs on this data and
there are verified fusions present so the breakpoint.fa file should not be
empty. This is the error message in the log file:
Input files DNA, FASTA:
/media/sf_E_DRIVE/RNAseq_BAMs/Full_analysis/chimerascan/test2/tmp/breakpoints.fa
Reading reference sizes
Warning: Empty input file
Error: No unambiguous stretches of characters in the input. Aborting...
Any help on the matter would be greatly appreciated.
Original comment by mgower...@gmail.com
on 15 Apr 2015 at 6:36
I haven't received a response on it.
Let me know if you are able to find a solution/work around this issue.
Thanks.
Original comment by chavan.s...@gmail.com
on 15 Apr 2015 at 7:16
Same problem here on the tests datasets
Original comment by marc.del...@gmail.com
on 17 Jun 2015 at 12:18
Original issue reported on code.google.com by
chavan.s...@gmail.com
on 9 Apr 2014 at 3:22