marcos-diazg / musica

MuSiCa - Mutational Signatures in Cancer
https://www.clinicbarcelona.org/en/idibaps/research-areas/liver-digestive-system-and-metabolism/genetic-predisposition-to-gastrointestinal-cancer/tools
MIT License
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Downloaded plots have cut off info #33

Closed magdaaverte closed 4 years ago

magdaaverte commented 6 years ago

Hi, first of all thank you for this amazing, intuitive tool. It's so great to be able to detect mutational signature and compare to existing ones using one button! I would like to report an issue regarding downloaded plots. It seems that some information is cut off, e.g. prof96_plot: n in Relative contribution, the name of the file if it's longer than ~10 characters signatures_plot: the name of the file on the bottom, values on the scale are not displayed fully comparison_with_cancers: names of signatures are pretty tight (that's lower priority) but the names of cancers like nasopharyngeal carcinoma or oral gingivo buccal squamous (cell carcinoma) are cut off, also the name of the file if it's as long I am using only one sample. Thanks so much! Musica_infoCutOff.pdf

marcos-diazg commented 6 years ago

Hello!

Thank you so much for using our application and for your nice comments about it! It's so rewarding to realize that our work can be useful for other people.

Regarding the issue you commented, it's true that the information is cut off sometimes, depending on the number of samples used. Sorry about that. In some of the cases the problem is that we updated the visualization of the plots in the application but not in the downloadable material. So, we will try to solve this issue is future releases of the application. However, in the short-term, I recommend you to directly save the image from the web browser.

Thank you so much for your feedback!

magdaaverte commented 6 years ago

Thank you, that is a good workaround for now. Good luck with the application!

marcos-diazg commented 4 years ago

Closed by inactivity and focus on new projects.