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marcus1487
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nanoraw
Genome guided re-segmention and visualization for raw nanopore sequencing data.
https://pypi.python.org/pypi/nanoraw
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Why my data didn't have this attribute?
#60
omegahh
closed
5 years ago
1
problem with genome_resquiggle
#59
lfaino
closed
5 years ago
0
problem with installation
#58
lfaino
closed
5 years ago
1
corrected group is empty
#57
smm19900210
closed
5 years ago
0
basecall-group or Analyses group does not exist.
#56
smm19900210
closed
6 years ago
0
Running nanoraw
#55
ahmirza
closed
5 years ago
1
nanoraw superseded by Tombo
#54
tillbaar
closed
5 years ago
0
The meanings of "--statistics-filename"
#53
liuqianhn
closed
5 years ago
4
Resquiggle fails with `Events appear to start before the raw signal` for direct RNA seq
#52
lpryszcz
closed
6 years ago
2
Alignment not produced error and a potential bug
#51
haotianteng
closed
6 years ago
2
Nanoraw ignores moves longer than one
#50
rasto2211
closed
6 years ago
8
genome_resquiggle problem
#49
yasukoh
closed
6 years ago
1
mapping raw or normalized signal without called events
#48
al2na
closed
6 years ago
1
Issue with extracting out the sequence with genome_resquiggle with direct RNA sequencing
#47
awjga
closed
6 years ago
2
Suggest minimap2 as option
#46
timp0
closed
5 years ago
2
Problem with mapping when using genome_resquiggle
#45
awjga
closed
6 years ago
0
explanation of genome_alignment, read_alignment, read_segments and Events
#44
liuqianhn
closed
7 years ago
3
Nanoraw index
#43
marcus1487
opened
7 years ago
0
test data
#42
osilander
opened
7 years ago
2
fast5s not found within subfolders
#41
scottgigante
closed
7 years ago
5
Add heterozygosity test
#40
marcus1487
opened
7 years ago
1
Start_time not present in fast5
#39
usamec
closed
7 years ago
4
Nanoraw error
#38
Subhi
closed
7 years ago
5
plot error
#37
athulmenon
closed
7 years ago
2
no data in corrected-group
#36
sathishkumarRamaswamy
closed
7 years ago
3
Execution failure
#35
cjwoodruff50
closed
7 years ago
8
Motif plotting subcommands strand issues
#34
marcus1487
opened
7 years ago
0
plot_max_coverage question
#33
MikeHala
closed
7 years ago
4
R7.3
#32
JohnUrban
opened
7 years ago
3
Add support for other mappers (BWA-MEM; last)
#31
marcus1487
closed
7 years ago
1
New function to produce suite of wiggle files
#30
marcus1487
closed
7 years ago
0
compress nanoraw fast5 data
#29
marcus1487
closed
7 years ago
0
Extracting fasta/fastq from corrected reads?
#28
danarte
closed
7 years ago
1
k-mer signal for up- and down-stream number of bases
#27
marcus1487
closed
7 years ago
0
Clarification about some plots
#26
danarte
closed
7 years ago
1
Batch graphmap calls
#25
marcus1487
closed
7 years ago
0
use move slot instead of checking actual matching model_states
#24
marcus1487
closed
7 years ago
0
Support multiple normalizations
#23
marcus1487
closed
7 years ago
1
Allow different normalization methods
#22
marcus1487
closed
7 years ago
0
plot corrections for several reads anchroed by genomic position
#21
marcus1487
closed
7 years ago
0
Better subcommands
#20
marcus1487
closed
7 years ago
0
fix filename parameter in correct_raw_data method
#19
mdcao
closed
7 years ago
1
correctly handle ambiguous indels
#18
marcus1487
closed
7 years ago
1
Off by one plotting coordinates
#17
marcus1487
closed
7 years ago
0
Should add an option to correct and investigate complement (in sequencing) reads
#16
marcus1487
closed
7 years ago
1
Added stranded option for write_wiggle function
#15
marcus1487
closed
7 years ago
0
plotting to display corrections
#14
marcus1487
closed
7 years ago
1
Create kmer model from run
#13
marcus1487
opened
7 years ago
0
Missing license
#12
druvus
closed
7 years ago
2
Downsample overplot option
#11
marcus1487
closed
7 years ago
0
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