Open angelosarmen opened 4 years ago
Dear Angelos, yes, I coded ChromA thinking that it will use just 1 exclusive node with many processors.
I am not familiar with the SGE cluster but I bet that it uses qsub to submit jobs. Can you try the option
and let me know if it works?
Also, can you try running just one file to see if installation and everything are all right?
Please, my email is mariano.gabitto@gmail.com . Write to me as I am interested in seeing if this works in SGE .
Thanks,
Mariano
I tried to run consensus ChromA on an SGE cluster using 16 slots with 16 GB memory per slot (total 256 GB), but the job aborted after this warning:
I don't know if this has anything to do with ChromA using more processors than the available slots, as seen in
sample.log
:Does ChromA require exclusive use of the node as in the SLURM example? Looking at the code, this seems to be the case, as
ray.init()
is called with the number of processors - 1.PS I tried asking the cluster for 24 slots but I would have to wait.