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marinebon / p2p

Pole to Pole website
https://marinebon.github.io/p2p
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make_sites_monthly not working on GHA. #27

Open eqmh opened 3 years ago

eqmh commented 3 years ago

Hey @bbest, @7yl4r, I added two new sites in Canada to data/sites.csv. GHA ran successfully for make_pages_on_push and make_obis_monthly, but not for make_sites_monthly, which generated this error:

install of package 'units' failed [error code 1].

make_sites_monthly has been failing for the past three months and satellite data on site pages are not up to date:

Thanks for looking at this!

bbest commented 3 years ago

Goal: update renv.lock with CRAN binary versions to prevent compilation errors with Github Action scripts and speed up running of scripts.

install same version of R as in Github Actions

R 4.1.1

source shelf()/library() calls in scripts/

Source shelf(), library() lines from scripts/:

update to more recent versions, but binary only

These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

1: All                                
2: CRAN packages only                 
3: None                               
4: htmltools (0.5.1.1 -> 0.5.2) [CRAN]
5: tibble    (3.1.3   -> 3.1.4) [CRAN]
6: stringi   (1.7.3   -> 1.7.4) [CRAN]

Enter one or more numbers, or an empty line to skip updates: 2
  There are binary versions available but the source
  versions are later:
           binary source needs_compilation
htmltools 0.5.1.1  0.5.2              TRUE
tibble      3.1.3  3.1.4              TRUE
stringi     1.7.3  1.7.4              TRUE

Do you want to install from sources the packages which need compilation? (Yes/no/cancel) no
> devtools::session_info()
─ Session info ──────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.1.1 (2021-08-10)
 os       macOS Big Sur 11.4
 system   x86_64, darwin17.0
 ui       RStudio
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       America/Los_Angeles
 date     2021-08-27

─ Packages ──────────────────────────────────────────────────────────────────────────────────────────
 package      * version date       lib source
 assertthat     0.2.1   2019-03-21 [1] CRAN (R 4.1.0)
 backports      1.2.1   2020-12-09 [1] CRAN (R 4.1.0)
 base64enc      0.1-3   2015-07-28 [1] CRAN (R 4.1.0)
 bitops         1.0-7   2021-04-24 [1] CRAN (R 4.1.0)
 broom          0.7.9   2021-07-27 [1] CRAN (R 4.1.0)
 bsplus       * 0.1.2   2020-06-25 [1] CRAN (R 4.1.0)
 cachem         1.0.6   2021-08-19 [1] CRAN (R 4.1.0)
 callr          3.7.0   2021-04-20 [1] CRAN (R 4.1.0)
 caTools      * 1.18.2  2021-03-28 [1] CRAN (R 4.1.0)
 cellranger     1.1.0   2016-07-27 [1] CRAN (R 4.1.0)
 class          7.3-19  2021-05-03 [1] CRAN (R 4.1.1)
 classInt       0.4-3   2020-04-07 [1] CRAN (R 4.1.0)
 cli            3.0.1   2021-07-17 [1] CRAN (R 4.1.0)
 codetools      0.2-18  2020-11-04 [1] CRAN (R 4.1.1)
 colorspace     2.0-2   2021-06-24 [1] CRAN (R 4.1.0)
 crayon         1.4.1   2021-02-08 [1] CRAN (R 4.1.0)
 crosstalk      1.1.1   2021-01-12 [1] CRAN (R 4.1.0)
 crul           1.1.0   2021-02-15 [1] CRAN (R 4.1.0)
 curl           4.3.2   2021-06-23 [1] CRAN (R 4.1.0)
 data.table     1.14.0  2021-02-21 [1] CRAN (R 4.1.0)
 DBI            1.1.1   2021-01-15 [1] CRAN (R 4.1.0)
 dbplyr         2.1.1   2021-04-06 [1] CRAN (R 4.1.0)
 desc           1.3.0   2021-03-05 [1] CRAN (R 4.1.0)
 devtools       2.4.2   2021-06-07 [1] CRAN (R 4.1.0)
 digest         0.6.27  2020-10-24 [1] CRAN (R 4.1.0)
 dplyr        * 1.0.7   2021-06-18 [1] CRAN (R 4.1.0)
 dygraphs     * 1.1.1.6 2018-07-11 [1] CRAN (R 4.1.0)
 e1071          1.7-8   2021-07-28 [1] CRAN (R 4.1.0)
 ellipsis       0.3.2   2021-04-29 [1] CRAN (R 4.1.0)
 evaluate       0.14    2019-05-28 [1] CRAN (R 4.1.0)
 fansi          0.5.0   2021-05-25 [1] CRAN (R 4.1.0)
 fastmap        1.1.0   2021-01-25 [1] CRAN (R 4.1.0)
 forcats      * 0.5.1   2021-01-27 [1] CRAN (R 4.1.0)
 fs           * 1.5.0   2020-07-31 [1] CRAN (R 4.1.0)
 generics       0.1.0   2020-10-31 [1] CRAN (R 4.1.0)
 geojsonlint    0.4.0   2020-02-13 [1] CRAN (R 4.1.0)
 ggplot2      * 3.3.5   2021-06-25 [1] CRAN (R 4.1.0)
 glue         * 1.4.2   2020-08-27 [1] CRAN (R 4.1.0)
 gtable         0.3.0   2019-03-25 [1] CRAN (R 4.1.0)
 haven          2.4.3   2021-08-04 [1] CRAN (R 4.1.0)
 here         * 1.0.1   2020-12-13 [1] CRAN (R 4.1.0)
 hms            1.1.0   2021-05-17 [1] CRAN (R 4.1.0)
 hoardr         0.5.2   2018-12-02 [1] CRAN (R 4.1.0)
 htmltools      0.5.1.1 2021-01-22 [1] CRAN (R 4.1.0)
 htmlwidgets    1.5.3   2020-12-10 [1] CRAN (R 4.1.0)
 httpcode       0.3.0   2020-04-10 [1] CRAN (R 4.1.0)
 httpuv         1.6.2   2021-08-18 [1] CRAN (R 4.1.0)
 httr           1.4.2   2020-07-20 [1] CRAN (R 4.1.0)
 jsonlite       1.7.2   2020-12-09 [1] CRAN (R 4.1.0)
 jsonvalidate   1.1.0   2019-06-25 [1] CRAN (R 4.1.0)
 KernSmooth     2.23-20 2021-05-03 [1] CRAN (R 4.1.1)
 knitr        * 1.33    2021-04-24 [1] CRAN (R 4.1.0)
 later          1.3.0   2021-08-18 [1] CRAN (R 4.1.0)
 lattice        0.20-44 2021-05-02 [1] CRAN (R 4.1.1)
 lazyeval       0.2.2   2019-03-15 [1] CRAN (R 4.1.0)
 leafem       * 0.1.6   2021-05-24 [1] CRAN (R 4.1.0)
 leaflet      * 2.0.4.1 2021-01-07 [1] CRAN (R 4.1.0)
 librarian    * 1.8.1   2021-07-12 [1] CRAN (R 4.1.0)
 lifecycle      1.0.0   2021-02-15 [1] CRAN (R 4.1.0)
 lubridate    * 1.7.10  2021-02-26 [1] CRAN (R 4.1.0)
 magrittr       2.0.1   2020-11-17 [1] CRAN (R 4.1.0)
 mapedit        0.6.0   2020-02-02 [1] CRAN (R 4.1.0)
 mapview      * 2.10.0  2021-06-05 [1] CRAN (R 4.1.0)
 memoise        2.0.0   2021-01-26 [1] CRAN (R 4.1.0)
 mime           0.11    2021-06-23 [1] CRAN (R 4.1.0)
 modelr         0.1.8   2020-05-19 [1] CRAN (R 4.1.0)
 munsell        0.5.0   2018-06-12 [1] CRAN (R 4.1.0)
 ncdf4          1.17    2019-10-23 [1] CRAN (R 4.1.0)
 pillar         1.6.2   2021-07-29 [1] CRAN (R 4.1.0)
 pkgbuild       1.2.0   2020-12-15 [1] CRAN (R 4.1.0)
 pkgconfig      2.0.3   2019-09-22 [1] CRAN (R 4.1.0)
 pkgload        1.2.1   2021-04-06 [1] CRAN (R 4.1.0)
 plotly         4.9.4.1 2021-06-18 [1] CRAN (R 4.1.0)
 png            0.1-7   2013-12-03 [1] CRAN (R 4.1.0)
 prettyunits    1.1.1   2020-01-24 [1] CRAN (R 4.1.0)
 processx       3.5.2   2021-04-30 [1] CRAN (R 4.1.0)
 promises       1.2.0.1 2021-02-11 [1] CRAN (R 4.1.0)
 proxy          0.4-26  2021-06-07 [1] CRAN (R 4.1.0)
 ps             1.6.0   2021-02-28 [1] CRAN (R 4.1.0)
 purrr        * 0.3.4   2020-04-17 [1] CRAN (R 4.1.0)
 R6             2.5.1   2021-08-19 [1] CRAN (R 4.1.0)
 rappdirs       0.3.3   2021-01-31 [1] CRAN (R 4.1.0)
 raster       * 3.4-13  2021-06-18 [1] CRAN (R 4.1.0)
 Rcpp           1.0.7   2021-07-07 [1] CRAN (R 4.1.0)
 readr        * 2.0.1   2021-08-10 [1] CRAN (R 4.1.0)
 readxl         1.3.1   2019-03-13 [1] CRAN (R 4.1.0)
 remotes        2.4.0   2021-06-02 [1] CRAN (R 4.1.0)
 reprex         2.0.1   2021-08-05 [1] CRAN (R 4.1.0)
 rerddap      * 0.7.6   2021-08-18 [1] CRAN (R 4.1.0)
 rlang          0.4.11  2021-04-30 [1] CRAN (R 4.1.0)
 rmapshaper   * 0.4.5   2021-05-26 [1] CRAN (R 4.1.0)
 rmarkdown    * 2.10    2021-08-06 [1] CRAN (R 4.1.0)
 robis        * 2.6.1   2021-08-27 [1] Github (iobis/robis@8c7ca34)
 rprojroot      2.0.2   2020-11-15 [1] CRAN (R 4.1.0)
 rstudioapi     0.13    2020-11-12 [1] CRAN (R 4.1.0)
 rvest          1.0.1   2021-07-26 [1] CRAN (R 4.1.0)
 satellite      1.0.2   2019-12-09 [1] CRAN (R 4.1.0)
 scales         1.1.1   2020-05-11 [1] CRAN (R 4.1.0)
 sessioninfo    1.1.1   2018-11-05 [1] CRAN (R 4.1.0)
 sf           * 1.0-2   2021-07-26 [1] CRAN (R 4.1.0)
 shiny          1.6.0   2021-01-25 [1] CRAN (R 4.1.0)
 sp           * 1.4-5   2021-01-10 [1] CRAN (R 4.1.0)
 stringi        1.7.3   2021-07-16 [1] CRAN (R 4.1.0)
 stringr      * 1.4.0   2019-02-10 [1] CRAN (R 4.1.0)
 testthat       3.0.4   2021-07-01 [1] CRAN (R 4.1.0)
 tibble       * 3.1.3   2021-07-23 [1] CRAN (R 4.1.0)
 tictoc       * 1.0.1   2021-04-19 [1] CRAN (R 4.1.0)
 tidyr        * 1.1.3   2021-03-03 [1] CRAN (R 4.1.0)
 tidyselect     1.1.1   2021-04-30 [1] CRAN (R 4.1.0)
 tidyverse    * 1.3.1   2021-04-15 [1] CRAN (R 4.1.0)
 tzdb           0.1.2   2021-07-20 [1] CRAN (R 4.1.0)
 units          0.7-2   2021-06-08 [1] CRAN (R 4.1.0)
 usethis        2.0.1   2021-02-10 [1] CRAN (R 4.1.0)
 utf8           1.2.2   2021-07-24 [1] CRAN (R 4.1.0)
 V8             3.4.2   2021-05-01 [1] CRAN (R 4.1.0)
 vctrs          0.3.8   2021-04-29 [1] CRAN (R 4.1.0)
 viridisLite    0.4.0   2021-04-13 [1] CRAN (R 4.1.0)
 webshot        0.5.2   2019-11-22 [1] CRAN (R 4.1.0)
 withr          2.4.2   2021-04-18 [1] CRAN (R 4.1.0)
 xfun           0.25    2021-08-06 [1] CRAN (R 4.1.0)
 xml2           1.3.2   2020-04-23 [1] CRAN (R 4.1.0)
 xtable         1.8-4   2019-04-21 [1] CRAN (R 4.1.0)
 xts          * 0.12.1  2020-09-09 [1] CRAN (R 4.1.0)
 yaml         * 2.2.1   2020-02-01 [1] CRAN (R 4.1.0)
 zoo          * 1.8-9   2021-03-09 [1] CRAN (R 4.1.0)

run renv::snapshot(), skip activate

renv::snapshot()
Would you like to activate this project before snapshot? [Y/n]: n
The following package(s) will be updated in the lockfile:

# CRAN ===============================
- BH              [1.75.0-0 -> *]
- BiocManager     [1.30.10 -> 1.30.16]
- KernSmooth      [2.23-18 -> 2.23-20]
- MASS            [7.3-53 -> 7.3-54]
- Matrix          [1.3-2 -> 1.3-4]
- R6              [2.5.0 -> 2.5.1]
- RCurl           [1.98-1.2 -> *]
- Rcpp            [1.0.6 -> 1.0.7]
- V8              [3.4.0 -> 3.4.2]
- bitops          [1.0-6 -> *]
- blob            [1.2.1 -> 1.2.2]
- brio            [1.1.1 -> *]
- broom           [0.7.4 -> 0.7.9]
- bslib           [0.2.4 -> 0.2.5.1]
- cachem          [1.0.3 -> 1.0.6]
- callr           [3.5.1 -> 3.7.0]
- class           [7.3-18 -> 7.3-19]
- cli             [2.3.0 -> 3.0.1]
- colorspace      [2.0-0 -> 2.0-2]
- cpp11           [0.2.6 -> 0.3.1]
- crul            [1.0.0 -> 1.1.0]
- curl            [4.3 -> 4.3.2]
- data.table      [1.13.6 -> 1.14.0]
- dbplyr          [2.1.0 -> 2.1.1]
- desc            [1.2.0 -> 1.3.0]
- diffobj         [0.3.3 -> *]
- dplyr           [1.0.4 -> 1.0.7]
- e1071           [1.7-4 -> 1.7-8]
- ellipsis        [0.3.1 -> 0.3.2]
- fansi           [0.4.2 -> 0.5.0]
- farver          [2.0.3 -> 2.1.0]
- formatR         [1.7 -> 1.11]
- gdtools         [0.2.3 -> *]
- ggplot2         [3.3.3 -> 3.3.5]
- haven           [2.3.1 -> 2.4.3]
- highr           [0.8 -> 0.9]
- hms             [1.0.0 -> 1.1.0]
- httpuv          [1.5.5 -> 1.6.2]
- isoband         [0.2.3 -> 0.2.5]
- jqr             [1.2.0 -> 1.2.1]
- jquerylib       [0.1.3 -> 0.1.4]
- knitr           [1.31 -> 1.33]
- later           [1.1.0.1 -> 1.3.0]
- lattice         [0.20-41 -> 0.20-44]
- leafem          [trafficonese/leafem -> 0.1.6]
- leafpop         [0.0.6 -> 0.1.0]
- librarian       [1.7.0 -> 1.8.1]
- lifecycle       [0.2.0 -> 1.0.0]
- lubridate       [1.7.9.2 -> 1.7.10]
- maptools        [1.0-2 -> 1.1-1]
- mapview         [2.9.0 -> 2.10.0]
- mgcv            [1.8-33 -> 1.8-36]
- mime            [0.10 -> 0.11]
- mregions        [0.1.6 -> *]
- openssl         [1.4.3 -> 1.4.4]
- pillar          [1.4.7 -> 1.6.2]
- pkgbuild        [1.2.0 -> *]
- pkgload         [1.1.0 -> 1.2.1]
- plotly          [4.9.3 -> 4.9.4.1]
- praise          [1.0.0 -> *]
- processx        [3.4.5 -> 3.5.2]
- promises        [1.1.1 -> 1.2.0.1]
- protolite       [2.1 -> 2.1.1]
- ps              [1.5.0 -> 1.6.0]
- raster          [3.4-5 -> 3.4-13]
- readr           [1.4.0 -> 2.0.1]
- remotes         [2.2.0 -> 2.4.0]
- renv            [0.12.5 -> 0.14.0]
- reprex          [1.0.0 -> 2.0.1]
- rerddap         [0.7.0 -> 0.7.6]
- reticulate      [1.18 -> *]
- rlang           [0.4.10 -> 0.4.11]
- rmarkdown       [rstudio/rmarkdown@HEAD -> 2.10]
- rnaturalearth   [0.1.0 -> *]
- rvest           [0.3.6 -> 1.0.1]
- sass            [0.3.1 -> 0.4.0]
- servr           [0.21 -> 0.23]
- sf              [0.9-7 -> 1.0-2]
- stringi         [1.5.3 -> 1.7.3]
- svglite         [1.2.3.2 -> 2.0.0]
- systemfonts     [1.0.0 -> 1.0.2]
- testthat        [3.0.2 -> *]
- tibble          [3.0.6 -> 3.1.3]
- tidyr           [1.1.2 -> 1.1.3]
- tidyselect      [1.1.0 -> 1.1.1]
- tidyverse       [1.3.0 -> 1.3.1]
- tinytex         [0.29 -> 0.33]
- units           [0.6-7 -> 0.7-2]
- utf8            [1.1.4 -> 1.2.2]
- vctrs           [0.3.6 -> 0.3.8]
- viridis         [0.5.1 -> 0.6.1]
- viridisLite     [0.3.0 -> 0.4.0]
- waldo           [0.2.4 -> *]
- wellknown       [0.7.2 -> *]
- withr           [2.4.1 -> 2.4.2]
- wk              [0.3.4 -> 0.5.0]
- xfun            [0.21 -> 0.25]
- xts             [joshuaulrich/xts@HEAD -> 0.12.1]
- zoo             [1.8-8 -> 1.8-9]
- bit             [* -> 4.0.4]
- bit64           [* -> 4.0.5]
- dtplyr          [* -> 1.1.0]
- gargle          [* -> 1.2.0]
- googledrive     [* -> 2.0.0]
- googlesheets4   [* -> 1.0.0]
- ids             [* -> 1.0.1]
- proxy           [* -> 0.4-26]
- s2              [* -> 1.0.6]
- tzdb            [* -> 0.1.2]
- vroom           [* -> 1.5.4]

# GitHub =============================
- robis           [2.3.9 -> iobis/robis@HEAD]

Do you want to proceed? [y/N]: y
bbest commented 3 years ago

renv::snapshot(type="explicit") with pkg deps in DESCRIPTION

renv::snapshot(type="explicit", prompt=F)
bbest commented 3 years ago

Ok, above works seems to have solved it, eg https://github.com/marinebon/p2p/actions/runs/1174755258.

Here's the recipe for future updates:

  1. Install R the same version on Mac as that of Github Action.
  2. In RStudio Packages pane, update to Latest, but do not install from source for newer version, stick with binary only. Check versions of R packages with: 
    devtools::session_info()`
  3. Update DESCRIPTION file with any package dependencies from scripts (see step 2).
  4. Run the following to update the renv.lock file: 
    renv::snapshot(type="explicit", prompt=F)
  5. Git push updates and Run workflow under Actions
eqmh commented 3 years ago

Thanks @bbest!

make_sites_monthly and make_obis_monthly seemed to run fine but the pages for the new added sites are not showing up. The site markers in Canada do appear on the main map but when you click them there is no page.

Also, something is returning a message on the home page (index.Rmd) and the Events page:

image

image

bbest commented 3 years ago

Hi @eqmh,

I think I fixed everything above, but please let me know if not.

Cheers, Ben

eqmh commented 3 years ago

Hey @bbest,

The message is not showing up on the Home but is still present in the Events page.

Also, the pages of the two new sites in Nova Scotia (Black Beach and Mispec Beach) are not rendering when you click on the markers. Nonetheless, the html files were created in docs, and the SST and CHL tables are in the data folder.

The obis_data.csv is now several thousands records larger likely from adding these two new sites, so that seems ok.

Thanks! Enrique

eqmh commented 2 years ago

Hi @bbest,

I just noticed that the maps with satellite data are not up to date and so ran the _make_sitesmonthly and _make_pages_onpush GHA's but got the same error of the 'units' package not installing. Not sure how to follow your instructions above from Aug 27.

I also need to make some other minor updates to our site that will require _make_pages_onpush.

Many thanks, again.

bbest commented 2 years ago

Ok, copying the error message from GH Action build https://github.com/marinebon/p2p/runs/6231041968?check_suite_focus=true#step:6:1049...

Installing units [0.7-2] ...
    FAILED
Error installing package 'units':
Error: Error: install of package 'units' failed [error code 1]
=================================

* installing *source* package ‘units’ ...
** package ‘units’ successfully unpacked and MD5 sums checked
** using staged installation
configure: units: 0.7-2
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++14 accepts -g... yes
checking how to run the C++ preprocessor... clang++ -mmacosx-version-min=10.13 -std=gnu++14 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... no
checking for _Bool... no
checking for error_at_line... no
checking for gcc... clang -mmacosx-version-min=10.13
checking whether we are using the GNU C compiler... yes
checking whether clang -mmacosx-version-min=10.13 accepts -g... yes
checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed
checking for XML_ParserCreate in -lexpat... yes
checking udunits2.h usability... no
checking udunits2.h presence... no
checking for udunits2.h... no
checking udunits2/udunits2.h usability... no
checking udunits2/udunits2.h presence... no
checking for udunits2/udunits2.h... no
checking for ut_read_xml in -ludunits2... no
configure: error: in `/private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/Rtmpaoh3qd/R.INSTALL3ef03795e321/units':
configure: error: 
--------------------------------------------------------------------------------
  Configuration failed because libudunits2.so was not found. Try installing:
    * deb: libudunits2-dev (Debian, Ubuntu, ...)
    * rpm: udunits2-devel (Fedora, EPEL, ...)
    * brew: udunits (OSX)
  If udunits2 is already installed in a non-standard location, use:
    --configure-args='--with-udunits2-lib=/usr/local/lib'
  if the library was not found, and/or:
    --configure-args='--with-udunits2-include=/usr/include/udunits2'
  if the header was not found, replacing paths with appropriate values.
  You can alternatively set UDUNITS2_INCLUDE and UDUNITS2_LIBS manually.
--------------------------------------------------------------------------------

See `config.log' for more details
ERROR: configuration failed for package ‘units’
* removing ‘/Users/runner/work/_temp/Library/.renv/1/units’
Traceback (most recent calls last):
12: renv::restore()
11: renv_restore_run_actions(project, diff, current, lockfile, rebuild)
10: renv_install_impl(records)
 9: renv_install_staged(records)
 8: renv_install_default(records)
 7: handler(package, renv_install_package(record))
 6: renv_install_package(record)
 5: withCallingHandlers(renv_install_package_impl(record), error = function(e) {
        vwritef("\tFAILED")
        writef(e$output)
    })
 4: renv_install_package_impl(record)
 3: r_cmd_install(package, path)
 2: r_exec_error(package, output, "install", status)
 1: stop(error)
Execution halted
Error: Process completed with exit code 1.
bbest commented 2 years ago

Trying recommended fix with this run of make_pages_on_push · marinebon/p2p@48f9fec:

https://github.com/marinebon/p2p/blob/48f9fecf7267200be06fbf7d5d49bda120e16d6c/.github/workflows/make_pages_on_push.yml#L29-L31

bbest commented 2 years ago

Now getting new error in make_pages_on_push · marinebon/p2p@48f9fec:

Installing rgeos [0.5-5] ...
    FAILED
Error installing package 'rgeos':
Error: Error: install of package 'rgeos' failed [error code 1]
=================================

* installing *source* package ‘rgeos’ ...
** package ‘rgeos’ successfully unpacked and MD5 sums checked
** using staged installation
configure: CC: clang -mmacosx-version-min=10.13
configure: CXX: clang++ -mmacosx-version-min=10.13 -std=gnu++14
configure: rgeos: 0.5-5
checking for /usr/bin/svnversion... no
configure: svn revision: 640
checking for geos-config... no
no
configure: error: geos-config not found or not executable.
ERROR: configuration failed for package ‘rgeos’

Per configure: error: geos-config not found or not executable. ERROR: configuration failed for package ‘rgeos’ problem while installing sf package on MacOS · Issue #1797 · r-spatial/sf, going to try:

brew install pkg-config 
brew install gdal
bbest commented 2 years ago

Trying again with make_pages_on_push · marinebon/p2p@656b51f

bbest commented 2 years ago

Ugh, 3.10.2 > 3.2.0 so the checking is wrong 😠 :

Installing rgeos [0.5-5] ...
    FAILED
Error: Error: install of package 'rgeos' failed [error code 1]
Error installing package 'rgeos':
=================================

* installing *source* package ‘rgeos’ ...
** package ‘rgeos’ successfully unpacked and MD5 sums checked
** using staged installation
configure: CC: clang -mmacosx-version-min=10.13
configure: CXX: clang++ -mmacosx-version-min=10.13 -std=gnu++14
configure: rgeos: 0.5-5
checking for /usr/bin/svnversion... no
configure: svn revision: 640
checking for geos-config... /usr/local/bin/geos-config
checking geos-config usability... yes
configure: GEOS version: 3.10.2
checking geos version at least 3.2.0... no
configure: error: Upgrade GEOS to at least 3.2.0
ERROR: configuration failed for package ‘rgeos’
bbest commented 2 years ago

Next step is removing dependency on these aging, ailing packages rgeos (and rgdal), per: