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marinebon / www_marinebon2

MBON Website 2021 Rebuild in progress
https://marinebon2.netlify.app/
MIT License
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EarthCube Product Registry #5

Open 7yl4r opened 3 years ago

7yl4r commented 3 years ago

I met with Stephen Richard from the EarthCube resource registry & USGIN to discuss potential synergy with EarthCube's efforts to catalog tools & tool metadata with regards to our #4. My dream would be to register our tools with the EarthCube registry and then create a pretty view using their backend or some RESTful frontend they would provide.

Regarding registering: we should probably do that anyway. Here is the EarthCube Tool Registry Form. Stephen was able to look at the seascapeR package and add it relatively easily. The resulting record can be viewed in the Suave tool browser interface, just search for "seascape". After another harvesting/processing step is complete the record will be viewable in the GEOCODES tool browser. This tool browser will soon be upgraded to something like the new GEOCODES interface (currently beta).

My quick notes about way this all works:

  1. registry form goes to spreadsheet
  2. data gets picked up and turned into JSON-LD (based on Schema.org?).
  3. data is put into a triplestore database so SPARQL queries can be run
  4. other harvesters (like google datasets) can pick up the data published as JSON-LD using schema.org standards.

In Summary

  1. It would be ideal if we could leverage this existing infrastructure but a lot of work will need to be done.
  2. Stephen's group may be able to provide us with more features as they continue development. So this is worth keeping an eye on.
  3. At a minimum we should consider the existing tool metadata work here
  4. we should register our tools in the EC Registry either way
bbest commented 3 years ago

Nice! Here's what I'm seeing on desktop in Suave tool browser interface:

image

That's a good idea to borrow from fields there:

seascapeR seascapeR Resource type: Software The seascapeR package provides functions for fetching, analyzing and visualizing Seascapes, a global and regional dynamic sea water classification product derived from satellite imagery by Maria Kavanaugh (OSU). MBON Seascapes identifies spatially ex... links: https://marinebon.org/seascapeR/

Type of Resource Software Name seascapeR Description The seascapeR package provides functions for fetching, analyzing and visualizing Seascapes, a global and regional dynamic sea water classification product derived from satellite imagery by Maria Kavanaugh (OSU). MBON Seascapes identifies spatially explicit water masses with particular biogeochemical features using a model and satellite-derived measurements. Marine Biodiversity Observation Network (MBON) is a global initiative to integrate data to improve understanding of changes and connections between marine biodiversity and ecosystem functions. In particular, this package is meant to help nodes in the MarineBON.org network extract Seascape data, especially across NOAA Sanctuaries, for comparison with biological data from eDNA, sound, telemetry and other observational data to evaluate how dynamic water masses relate to ecosystem function. Citation Best, Ben, Herrera, Enrique Montes, and Kavanaugh, Maria, 2021, SeascapeR, Responsible Party creator, person, Ben Best, creator, person, Enrique Montes Herrera creator, person, Maria Kavanaugh, Readable Page https://marinebon.org/seascapeR/ Keywords oceanography, sea water mass classification Maturity/status In production License MIT Target Audience Data Users, Scientists, Members of the Public Expected Lifetime Unknown Usage Unknown Related Resources Seascapes classification scheme, Science Domain Biological Oceanography, Chemical Oceanography, Environmental Science, Marine Geology Funding Source US National Oceanic and Atmospheric Administration (NOAA) Programming Languages R Code Repository URL https://github.com/marinebon/seascapeR Input format text/plain;application=OpenDAPv2-DDS Runtime Environment R studio Installer Package In R Studio remotes::install_github('marinebon/seascapeR') Stewardship Name Ben Best, Stewardship Type Person Registry Contributor Stephen M. Richard ORCID of the Contributor https://orcid.org/0000-0001-6041-5302 Email Address smrTucson@gmail.com Timestamp Fri Apr 02 2021 13:11:29 GMT-0700 (Mountain Standard Time)

bbest commented 3 years ago

Also, there's more on how to enable dataset discovery here: Dataset  |  Search Central  |  Google Developers