marioangst / motifr

Motif analysis in multi-level networks
https://marioangst.github.io/motifr/
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ml_net is directed #38

Closed tseppelt closed 4 years ago

tseppelt commented 4 years ago

Surprisingly,

> is.directed(ml_net)
[1] TRUE

I think m̀l_net shouldn't be directed. Please check.

tseppelt commented 4 years ago

c75eb16 added support for directed networks. Now, with default parameters, ml_net is treated as directed network which hence exhibits only directed motifs. This has the consequence that most examples in the vignettes don't work anymore as there based on undirected motifs. Two solutions:

@marioangst how shall we handle this? You know ml_net best.

marioangst commented 4 years ago

made undirected, ok for illustrative purposes here. a59f280e4382d617cf8c7d3c5770aa836e8dfe83 #