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mariomulansky / PySpike

Python implementation of spike distance metrics
http://mariomulansky.github.io/PySpike
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cannot install PySpike #51

Closed farazmoradi closed 1 year ago

farazmoradi commented 3 years ago

pip install pyspike (Mouse) farazmoradi@farazs-MacBook-Pro Mouse % pip install pyspike Collecting pyspike Using cached pyspike-0.6.0.tar.gz (1.5 MB) Requirement already satisfied: numpy in /Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages (from pyspike) (1.20.2) Building wheels for collected packages: pyspike Building wheel for pyspike (setup.py) ... error ERROR: Command errored out with exit status 1: command: /Users/farazmoradi/.conda/envs/Mouse/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/1t/1c7wwn1d66s27vn36sdky3lm0000gn/T/pip-install-xsterkuo/pyspike_799559b016c94faa85778bfccc27efed/setup.py'"'"'; file='"'"'/private/var/folders/1t/1c7wwn1d66s27vn36sdky3lm0000gn/T/pip-install-xsterkuo/pyspike_799559b016c94faa85778bfccc27efed/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/1t/1c7wwn1d66s27vn36sdky3lm0000gn/T/pip-wheel-r9c4wsku cwd: /private/var/folders/1t/1c7wwn1d66s27vn36sdky3lm0000gn/T/pip-install-xsterkuo/pyspike_799559b016c94faa85778bfccc27efed/ Complete output (346 lines): running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.9-x86_64-3.9 creating build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/spike_distance.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/DiscreteFunc.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/spikes.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/PieceWiseConstFunc.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/generic.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/init.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/PieceWiseLinFunc.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/psth.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/spike_directionality.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/spike_sync.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/SpikeTrain.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike copying pyspike/isi_distance.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike creating build/lib.macosx-10.9-x86_64-3.9/pyspike/cython copying pyspike/cython/init.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython copying pyspike/cython/python_backend.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython copying pyspike/cython/directionality_python_backend.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython copying pyspike/cython/cython_add.c -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython copying pyspike/cython/cython_profiles.c -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython copying pyspike/cython/cython_distances.c -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython copying pyspike/cython/cython_directionality.c -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython copying pyspike/cython/cython_simulated_annealing.c -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython running build_ext skipping 'pyspike/cython/cython_add.c' Cython extension (up-to-date) skipping 'pyspike/cython/cython_profiles.c' Cython extension (up-to-date) skipping 'pyspike/cython/cython_distances.c' Cython extension (up-to-date) skipping 'pyspike/cython/cython_directionality.c' Cython extension (up-to-date) skipping 'pyspike/cython/cython_simulated_annealing.c' Cython extension (up-to-date) building 'pyspike.cython.cython_add' extension creating build/temp.macosx-10.9-x86_64-3.9 creating build/temp.macosx-10.9-x86_64-3.9/pyspike creating build/temp.macosx-10.9-x86_64-3.9/pyspike/cython clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/farazmoradi/.conda/envs/Mouse/include -arch x86_64 -fPIC -O2 -isystem /Users/farazmoradi/.conda/envs/Mouse/include -arch x86_64 -I/Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages/numpy/core/include -I/Users/farazmoradi/.conda/envs/Mouse/include/python3.9 -c pyspike/cython/cython_add.c -o build/temp.macosx-10.9-x86_64-3.9/pyspike/cython/cython_add.o In file included from pyspike/cython/cython_add.c:242: In file included from /Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944: /Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]

warning "Using deprecated NumPy API, disable it with " \

^ pyspike/cython/cython_add.c:6719:134: warning: code will never be executed [-Wunreachable-code] pyx_t_3 = PyTuple_GET_ITEM(pyx_t_1, pyx_t_2); Pyx_INCREF(pyx_t_3); pyx_t_2++; if (unlikely(0 < 0)) {pyx_filename = __pyx_f[1]; pyx_lineno = 794; pyx_clineno = LINE; goto __pyx_L1_error;} ^~~ pyspike/cython/cython_add.c:7941:134: warning: code will never be executed [-Wunreachable-code] pyx_t_3 = PyTuple_GET_ITEM(pyx_t_5, pyx_t_1); Pyx_INCREF(pyx_t_3); pyx_t_1++; if (unlikely(0 < 0)) {__pyx_filename = pyx_f[2]; pyx_lineno = 147; __pyx_clineno = LINE; goto pyx_L1_error;} ^~~ pyspike/cython/cython_add.c:9918:138: warning: code will never be executed [-Wunreachable-code] pyx_t_5 = PyTuple_GET_ITEM(pyx_t_2, pyx_t_3); Pyx_INCREF(pyx_t_5); pyx_t_3++; if (unlikely(0 < 0)) {pyx_filename = __pyx_f[2]; pyx_lineno = 352; pyx_clineno = LINE; goto __pyx_L1_error;} ^~~ pyspike/cython/cython_add.c:9910:137: warning: code will never be executed [-Wunreachable-code] pyx_t_5 = PyList_GET_ITEM(pyx_t_2, pyx_t_3); Pyx_INCREF(pyx_t_5); pyx_t_3++; if (unlikely(0 < 0)) {__pyx_filename = pyx_f[2]; pyx_lineno = 352; __pyx_clineno = LINE; goto pyx_L1_error;} ^~~ pyspike/cython/cython_add.c:13451:138: warning: code will never be executed [-Wunreachable-code] pyx_t_7 = PyTuple_GET_ITEM(pyx_t_4, pyx_t_5); Pyx_INCREF(pyx_t_7); pyx_t_5++; if (unlikely(0 < 0)) {pyx_filename = __pyx_f[2]; pyx_lineno = 637; pyx_clineno = LINE; goto __pyx_L1_error;} ^~~ pyspike/cython/cython_add.c:13443:137: warning: code will never be executed [-Wunreachable-code] pyx_t_7 = PyList_GET_ITEM(pyx_t_4, pyx_t_5); Pyx_INCREF(pyx_t_7); pyx_t_5++; if (unlikely(0 < 0)) {__pyx_filename = pyx_f[2]; pyx_lineno = 637; __pyx_clineno = LINE; goto pyx_L1_error;} ^~~ pyspike/cython/cython_add.c:14068:138: warning: code will never be executed [-Wunreachable-code] pyx_t_9 = PyTuple_GET_ITEM(pyx_t_3, pyx_t_7); Pyx_INCREF(pyx_t_9); pyx_t_7++; if (unlikely(0 < 0)) {pyx_filename = __pyx_f[2]; pyx_lineno = 704; pyx_clineno = LINE; goto __pyx_L1_error;} ^~~ pyspike/cython/cython_add.c:14060:137: warning: code will never be executed [-Wunreachable-code] pyx_t_9 = PyList_GET_ITEM(pyx_t_3, pyx_t_7); Pyx_INCREF(pyx_t_9); pyx_t_7++; if (unlikely(0 < 0)) {__pyx_filename = pyx_f[2]; pyx_lineno = 704; __pyx_clineno = LINE; goto pyx_L1_error;} ^~~ pyspike/cython/cython_add.c:20325:26: error: no member named 'tp_print' in 'struct _typeobject' pyxtypepyx_array.tp_print = 0;


  pyspike/cython/cython_add.c:20328:32: error: no member named 'tp_print' in 'struct _typeobject'
    __pyx_type___pyx_MemviewEnum.tp_print = 0;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
  pyspike/cython/cython_add.c:20339:31: error: no member named 'tp_print' in 'struct _typeobject'
    __pyx_type___pyx_memoryview.tp_print = 0;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
  pyspike/cython/cython_add.c:20348:36: error: no member named 'tp_print' in 'struct _typeobject'
    __pyx_type___pyx_memoryviewslice.tp_print = 0;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
  pyspike/cython/cython_add.c:20700:22: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                       ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
        PyUnicode_WSTR_LENGTH(op) :                    \
        ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:20700:22: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                       ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
        ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
               ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:20700:22: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                       ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
         PyUnicode_WSTR_LENGTH(op)))
         ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:20700:52: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                     ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
        PyUnicode_WSTR_LENGTH(op) :                    \
        ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:20700:52: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                     ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
        ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
               ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:20700:52: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                     ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
         PyUnicode_WSTR_LENGTH(op)))
         ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:20716:26: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                           ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
        PyUnicode_WSTR_LENGTH(op) :                    \
        ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:20716:26: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                           ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
        ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
               ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:20716:26: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                           ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
         PyUnicode_WSTR_LENGTH(op)))
         ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:20716:59: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                            ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
        PyUnicode_WSTR_LENGTH(op) :                    \
        ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:20716:59: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                            ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
        ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
               ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:20716:59: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                            ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
         PyUnicode_WSTR_LENGTH(op)))
         ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:21924:16: warning: 'PyUnicode_FromUnicode' is deprecated [-Wdeprecated-declarations]
          return PyUnicode_FromUnicode(NULL, 0);
                 ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:551:1: note: 'PyUnicode_FromUnicode' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode(
  ^
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  pyspike/cython/cython_add.c:21936:21: error: no member named 'exc_type' in 'struct _ts'
      *type = tstate->exc_type;
              ~~~~~~  ^
  pyspike/cython/cython_add.c:21937:22: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
      *value = tstate->exc_value;
                       ^~~~~~~~~
                       curexc_value
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:80:15: note: 'curexc_value' declared here
      PyObject *curexc_value;
                ^
  pyspike/cython/cython_add.c:21938:19: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
      *tb = tstate->exc_traceback;
                    ^~~~~~~~~~~~~
                    curexc_traceback
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:81:15: note: 'curexc_traceback' declared here
      PyObject *curexc_traceback;
                ^
  pyspike/cython/cython_add.c:21950:24: error: no member named 'exc_type' in 'struct _ts'
      tmp_type = tstate->exc_type;
                 ~~~~~~  ^
  pyspike/cython/cython_add.c:21951:25: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
      tmp_value = tstate->exc_value;
                          ^~~~~~~~~
                          curexc_value
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:80:15: note: 'curexc_value' declared here
      PyObject *curexc_value;
                ^
  pyspike/cython/cython_add.c:21952:22: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
      tmp_tb = tstate->exc_traceback;
                       ^~~~~~~~~~~~~
                       curexc_traceback
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:81:15: note: 'curexc_traceback' declared here
      PyObject *curexc_traceback;
                ^
  pyspike/cython/cython_add.c:21953:13: error: no member named 'exc_type' in 'struct _ts'
      tstate->exc_type = type;
      ~~~~~~  ^
  pyspike/cython/cython_add.c:21954:13: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
      tstate->exc_value = value;
              ^~~~~~~~~
              curexc_value
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:80:15: note: 'curexc_value' declared here
      PyObject *curexc_value;
                ^
  pyspike/cython/cython_add.c:21955:13: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
      tstate->exc_traceback = tb;
              ^~~~~~~~~~~~~
              curexc_traceback
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:81:15: note: 'curexc_traceback' declared here
      PyObject *curexc_traceback;
                ^
  pyspike/cython/cython_add.c:21998:24: error: no member named 'exc_type' in 'struct _ts'
      tmp_type = tstate->exc_type;
                 ~~~~~~  ^
  pyspike/cython/cython_add.c:21999:25: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
      tmp_value = tstate->exc_value;
                          ^~~~~~~~~
                          curexc_value
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:80:15: note: 'curexc_value' declared here
      PyObject *curexc_value;
                ^
  pyspike/cython/cython_add.c:22000:22: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
      tmp_tb = tstate->exc_traceback;
                       ^~~~~~~~~~~~~
                       curexc_traceback
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:81:15: note: 'curexc_traceback' declared here
      PyObject *curexc_traceback;
                ^
  pyspike/cython/cython_add.c:22001:13: error: no member named 'exc_type' in 'struct _ts'
      tstate->exc_type = local_type;
      ~~~~~~  ^
  pyspike/cython/cython_add.c:22002:13: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
      tstate->exc_value = local_value;
              ^~~~~~~~~
              curexc_value
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:80:15: note: 'curexc_value' declared here
      PyObject *curexc_value;
                ^
  pyspike/cython/cython_add.c:22003:13: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
      tstate->exc_traceback = local_tb;
              ^~~~~~~~~~~~~
              curexc_traceback
  /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:81:15: note: 'curexc_traceback' declared here
      PyObject *curexc_traceback;
                ^
  fatal error: too many errors emitted, stopping now [-ferror-limit=]
  22 warnings and 20 errors generated.
  error: command '/usr/bin/clang' failed with exit code 1
  ----------------------------------------
  ERROR: Failed building wheel for pyspike
  Running setup.py clean for pyspike
Failed to build pyspike
Installing collected packages: pyspike
    Running setup.py install for pyspike ... error
    ERROR: Command errored out with exit status 1:
     command: /Users/farazmoradi/.conda/envs/Mouse/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/1t/1c7wwn1d66s27vn36sdky3lm0000gn/T/pip-install-xsterkuo/pyspike_799559b016c94faa85778bfccc27efed/setup.py'"'"'; __file__='"'"'/private/var/folders/1t/1c7wwn1d66s27vn36sdky3lm0000gn/T/pip-install-xsterkuo/pyspike_799559b016c94faa85778bfccc27efed/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/1t/1c7wwn1d66s27vn36sdky3lm0000gn/T/pip-record-sus7thjn/install-record.txt --single-version-externally-managed --compile --install-headers /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyspike
         cwd: /private/var/folders/1t/1c7wwn1d66s27vn36sdky3lm0000gn/T/pip-install-xsterkuo/pyspike_799559b016c94faa85778bfccc27efed/
    Complete output (346 lines):
    running install
    running build
    running build_py
    creating build
    creating build/lib.macosx-10.9-x86_64-3.9
    creating build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/spike_distance.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/DiscreteFunc.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/spikes.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/PieceWiseConstFunc.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/generic.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/PieceWiseLinFunc.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/psth.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/spike_directionality.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/spike_sync.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/SpikeTrain.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    copying pyspike/isi_distance.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike
    creating build/lib.macosx-10.9-x86_64-3.9/pyspike/cython
    copying pyspike/cython/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython
    copying pyspike/cython/python_backend.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython
    copying pyspike/cython/directionality_python_backend.py -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython
    copying pyspike/cython/cython_add.c -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython
    copying pyspike/cython/cython_profiles.c -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython
    copying pyspike/cython/cython_distances.c -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython
    copying pyspike/cython/cython_directionality.c -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython
    copying pyspike/cython/cython_simulated_annealing.c -> build/lib.macosx-10.9-x86_64-3.9/pyspike/cython
    running build_ext
    skipping 'pyspike/cython/cython_add.c' Cython extension (up-to-date)
    skipping 'pyspike/cython/cython_profiles.c' Cython extension (up-to-date)
    skipping 'pyspike/cython/cython_distances.c' Cython extension (up-to-date)
    skipping 'pyspike/cython/cython_directionality.c' Cython extension (up-to-date)
    skipping 'pyspike/cython/cython_simulated_annealing.c' Cython extension (up-to-date)
    building 'pyspike.cython.cython_add' extension
    creating build/temp.macosx-10.9-x86_64-3.9
    creating build/temp.macosx-10.9-x86_64-3.9/pyspike
    creating build/temp.macosx-10.9-x86_64-3.9/pyspike/cython
    clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/farazmoradi/.conda/envs/Mouse/include -arch x86_64 -fPIC -O2 -isystem /Users/farazmoradi/.conda/envs/Mouse/include -arch x86_64 -I/Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages/numpy/core/include -I/Users/farazmoradi/.conda/envs/Mouse/include/python3.9 -c pyspike/cython/cython_add.c -o build/temp.macosx-10.9-x86_64-3.9/pyspike/cython/cython_add.o
    In file included from pyspike/cython/cython_add.c:242:
    In file included from /Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4:
    In file included from /Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
    In file included from /Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944:
    /Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
    #warning "Using deprecated NumPy API, disable it with " \
     ^
    pyspike/cython/cython_add.c:6719:134: warning: code will never be executed [-Wunreachable-code]
        __pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_3); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 794; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                                                                                                                                         ^~~~~~~
    pyspike/cython/cython_add.c:7941:134: warning: code will never be executed [-Wunreachable-code]
        __pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_5, __pyx_t_1); __Pyx_INCREF(__pyx_t_3); __pyx_t_1++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 147; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                                                                                                                                         ^~~~~~~
    pyspike/cython/cython_add.c:9918:138: warning: code will never be executed [-Wunreachable-code]
            __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 352; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                                                                                                                                             ^~~~~~~
    pyspike/cython/cython_add.c:9910:137: warning: code will never be executed [-Wunreachable-code]
            __pyx_t_5 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 352; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                                                                                                                                            ^~~~~~~
    pyspike/cython/cython_add.c:13451:138: warning: code will never be executed [-Wunreachable-code]
            __pyx_t_7 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_7); __pyx_t_5++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 637; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                                                                                                                                             ^~~~~~~
    pyspike/cython/cython_add.c:13443:137: warning: code will never be executed [-Wunreachable-code]
            __pyx_t_7 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_7); __pyx_t_5++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 637; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                                                                                                                                            ^~~~~~~
    pyspike/cython/cython_add.c:14068:138: warning: code will never be executed [-Wunreachable-code]
            __pyx_t_9 = PyTuple_GET_ITEM(__pyx_t_3, __pyx_t_7); __Pyx_INCREF(__pyx_t_9); __pyx_t_7++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 704; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                                                                                                                                             ^~~~~~~
    pyspike/cython/cython_add.c:14060:137: warning: code will never be executed [-Wunreachable-code]
            __pyx_t_9 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_7); __Pyx_INCREF(__pyx_t_9); __pyx_t_7++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 704; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                                                                                                                                            ^~~~~~~
    pyspike/cython/cython_add.c:20325:26: error: no member named 'tp_print' in 'struct _typeobject'
      __pyx_type___pyx_array.tp_print = 0;
      ~~~~~~~~~~~~~~~~~~~~~~ ^
    pyspike/cython/cython_add.c:20328:32: error: no member named 'tp_print' in 'struct _typeobject'
      __pyx_type___pyx_MemviewEnum.tp_print = 0;
      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
    pyspike/cython/cython_add.c:20339:31: error: no member named 'tp_print' in 'struct _typeobject'
      __pyx_type___pyx_memoryview.tp_print = 0;
      ~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
    pyspike/cython/cython_add.c:20348:36: error: no member named 'tp_print' in 'struct _typeobject'
      __pyx_type___pyx_memoryviewslice.tp_print = 0;
      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
    pyspike/cython/cython_add.c:20700:22: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                        (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                         ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
          PyUnicode_WSTR_LENGTH(op) :                    \
          ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
    #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                      ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3)
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:20700:22: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                        (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                         ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
          ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
                 ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:20700:22: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                        (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                         ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
           PyUnicode_WSTR_LENGTH(op)))
           ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
    #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                      ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3)
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:20700:52: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                        (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                       ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
          PyUnicode_WSTR_LENGTH(op) :                    \
          ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
    #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                      ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3)
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:20700:52: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                        (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                       ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
          ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
                 ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:20700:52: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                        (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                       ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
           PyUnicode_WSTR_LENGTH(op)))
           ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
    #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                      ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3)
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:20716:26: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                            (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                             ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
          PyUnicode_WSTR_LENGTH(op) :                    \
          ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
    #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                      ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3)
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:20716:26: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                            (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                             ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
          ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
                 ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:20716:26: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                            (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                             ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
           PyUnicode_WSTR_LENGTH(op)))
           ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
    #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                      ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3)
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:20716:59: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                            (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                              ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
          PyUnicode_WSTR_LENGTH(op) :                    \
          ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
    #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                      ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3)
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:20716:59: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                            (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                              ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
          ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
                 ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:20716:59: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                            (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                              ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
           PyUnicode_WSTR_LENGTH(op)))
           ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
    #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                      ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3)
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:21924:16: warning: 'PyUnicode_FromUnicode' is deprecated [-Wdeprecated-declarations]
            return PyUnicode_FromUnicode(NULL, 0);
                   ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/unicodeobject.h:551:1: note: 'PyUnicode_FromUnicode' has been explicitly marked deprecated here
    Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode(
    ^
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
    #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                         ^
    pyspike/cython/cython_add.c:21936:21: error: no member named 'exc_type' in 'struct _ts'
        *type = tstate->exc_type;
                ~~~~~~  ^
    pyspike/cython/cython_add.c:21937:22: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
        *value = tstate->exc_value;
                         ^~~~~~~~~
                         curexc_value
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:80:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    pyspike/cython/cython_add.c:21938:19: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
        *tb = tstate->exc_traceback;
                      ^~~~~~~~~~~~~
                      curexc_traceback
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:81:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    pyspike/cython/cython_add.c:21950:24: error: no member named 'exc_type' in 'struct _ts'
        tmp_type = tstate->exc_type;
                   ~~~~~~  ^
    pyspike/cython/cython_add.c:21951:25: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
        tmp_value = tstate->exc_value;
                            ^~~~~~~~~
                            curexc_value
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:80:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    pyspike/cython/cython_add.c:21952:22: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
        tmp_tb = tstate->exc_traceback;
                         ^~~~~~~~~~~~~
                         curexc_traceback
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:81:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    pyspike/cython/cython_add.c:21953:13: error: no member named 'exc_type' in 'struct _ts'
        tstate->exc_type = type;
        ~~~~~~  ^
    pyspike/cython/cython_add.c:21954:13: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
        tstate->exc_value = value;
                ^~~~~~~~~
                curexc_value
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:80:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    pyspike/cython/cython_add.c:21955:13: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
        tstate->exc_traceback = tb;
                ^~~~~~~~~~~~~
                curexc_traceback
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:81:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    pyspike/cython/cython_add.c:21998:24: error: no member named 'exc_type' in 'struct _ts'
        tmp_type = tstate->exc_type;
                   ~~~~~~  ^
    pyspike/cython/cython_add.c:21999:25: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
        tmp_value = tstate->exc_value;
                            ^~~~~~~~~
                            curexc_value
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:80:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    pyspike/cython/cython_add.c:22000:22: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
        tmp_tb = tstate->exc_traceback;
                         ^~~~~~~~~~~~~
                         curexc_traceback
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:81:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    pyspike/cython/cython_add.c:22001:13: error: no member named 'exc_type' in 'struct _ts'
        tstate->exc_type = local_type;
        ~~~~~~  ^
    pyspike/cython/cython_add.c:22002:13: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
        tstate->exc_value = local_value;
                ^~~~~~~~~
                curexc_value
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:80:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    pyspike/cython/cython_add.c:22003:13: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
        tstate->exc_traceback = local_tb;
                ^~~~~~~~~~~~~
                curexc_traceback
    /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/cpython/pystate.h:81:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    fatal error: too many errors emitted, stopping now [-ferror-limit=]
    22 warnings and 20 errors generated.
    error: command '/usr/bin/clang' failed with exit code 1
    ----------------------------------------
ERROR: Command errored out with exit status 1: /Users/farazmoradi/.conda/envs/Mouse/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/1t/1c7wwn1d66s27vn36sdky3lm0000gn/T/pip-install-xsterkuo/pyspike_799559b016c94faa85778bfccc27efed/setup.py'"'"'; __file__='"'"'/private/var/folders/1t/1c7wwn1d66s27vn36sdky3lm0000gn/T/pip-install-xsterkuo/pyspike_799559b016c94faa85778bfccc27efed/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/1t/1c7wwn1d66s27vn36sdky3lm0000gn/T/pip-record-sus7thjn/install-record.txt --single-version-externally-managed --compile --install-headers /Users/farazmoradi/.conda/envs/Mouse/include/python3.9/pyspike Check the logs for full command output.
xhulianoThe1 commented 2 years ago

Could this help?: https://github.com/mariomulansky/PySpike/issues/42

EdmundButler commented 1 year ago

This appears to be due to a known incompatibility between numpy and cython versions. See numpy issue #17937 on github. You should not see it using the latest versions of numpy and cython. But, if you do, please report that with the numpy and cython versions.

thomaskreuz commented 1 year ago

Issue should be resolved (see latest comment by Ed).