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markovmodel / PyEMMA

🚂 Python API for Emma's Markov Model Algorithms 🚂
http://pyemma.org
GNU Lesser General Public License v3.0
311 stars 119 forks source link

[msm/its] added 'only_timescales' option #1377

Closed marscher closed 6 years ago

marscher commented 6 years ago

Avoid blowing up memory, if one estimates ITS with BMSM and lots of states and or samples.

marscher commented 6 years ago

todo: add plotting test.

codecov[bot] commented 6 years ago

Codecov Report

:exclamation: No coverage uploaded for pull request base (devel@85c9426). Click here to learn what that means. The diff coverage is 99.03%.

Impacted file tree graph

@@           Coverage Diff            @@
##             devel    #1377   +/-   ##
========================================
  Coverage         ?   91.72%           
========================================
  Files            ?      223           
  Lines            ?    25244           
  Branches         ?        0           
========================================
  Hits             ?    23155           
  Misses           ?     2089           
  Partials         ?        0
Impacted Files Coverage Δ
pyemma/msm/api.py 90.98% <0%> (ø)
pyemma/_base/estimator.py 87.89% <100%> (ø)
pyemma/msm/tests/test_its.py 99.41% <100%> (ø)
pyemma/msm/estimators/implied_timescales.py 92.74% <100%> (ø)
pyemma/msm/tests/test_msm_serialization.py 99.45% <100%> (ø)
pyemma/plots/tests/test_its.py 97.05% <100%> (ø)

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