For the sake of lower maintenance overhead, we back-integrate the extensions of thermtools into PyEMMA. This also has the benefit of having sane compiler settings (debug handling, OpenMP etc.).
Note that the development history is preserved, so it will look like the developers of thermotools directly contributed to PyEMMA. If you think that this is unnecessary and only history pollution, I can squash it as well.
For the sake of lower maintenance overhead, we back-integrate the extensions of thermtools into PyEMMA. This also has the benefit of having sane compiler settings (debug handling, OpenMP etc.).
Note that the development history is preserved, so it will look like the developers of thermotools directly contributed to PyEMMA. If you think that this is unnecessary and only history pollution, I can squash it as well.