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markovmodel / PyEMMA

🚂 Python API for Emma's Markov Model Algorithms 🚂
http://pyemma.org
GNU Lesser General Public License v3.0
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Error upgrading to v2.5.5 #1411

Closed moldyn-nagel closed 5 years ago

moldyn-nagel commented 5 years ago

I am not able to upgrade from PyEMMA v2.5.2-v2.5.4 to v2.5.5. I am using pip3 install pyemma which raises following error:

I uninstalled all versions of pyemma and tried a upgrade of a clean installation from all three version (.2-.4) and a direct installation. The error remains. Logs are attached. Thank you for your help. log.txt

OS: Debian 9

marscher commented 5 years ago

This is indeed a mistake from our side. We forgot to package pybind11 in the source distribution on PyPI. You can install pybind11 prior upgrading, then it should work. Sorry for the inconvenience.

moldyn-nagel commented 5 years ago

Thank you for your help, but installing pybind11 doesn't change anything for me. I appended a list with my python env. pip_list.txt

marscher commented 5 years ago

You received the same output?

moldyn-nagel commented 5 years ago

At least the same error message. I'll send on Monday the new log file.

marscher commented 5 years ago

are you installing into your home directory or into a system global directory?

moldyn-nagel commented 5 years ago

Here is the error message and I am installing into my home directory (see log /home/user/...).

pyemma_log2.txt

marscher commented 5 years ago

including pybind11 as a submodule used to be the more error safe way of shipping it...

marscher commented 5 years ago

@moldyn-nagel expect a new version soon! Sorry for the inconvenience.

marscher commented 5 years ago

fixed by #1412