I have the biased and unbiased data. How can I calculate ttrajs, dtraj and bias for thermo.tram?

[Moutoshi]

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• [ ] Include a detailed description of the bug or suggestion
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[marscher]

please read the tutorials here: http://www.emma-project.org/v2.5.5/ipython.html#multi-ensemble-markov-state-models

have a look at other issues, there are related to your general question: https://github.com/markovmodel/PyEMMA/issues?q=is%3Aissue+ttraj+is%3Aclosed