I want to define a feature in which i want to take backbone and sidechain torsions but for a specific residue range.
lets say size of my protein is 120 aa, and i want to consider the above feature from residue number 111 to 120. How one can define the feature?? please help.
I use the following code for whole sequence but i didnt know how to do for specific sequence range
feat = pyemma.coordinates.featurizer(pdb) feat.add_backbone_torsions(cossin=True, periodic=False) feat.add_sidechain_torsions(which='chi1', cossin=True, periodic=False)
I want to define a feature in which i want to take backbone and sidechain torsions but for a specific residue range. lets say size of my protein is 120 aa, and i want to consider the above feature from residue number 111 to 120. How one can define the feature?? please help. I use the following code for whole sequence but i didnt know how to do for specific sequence range
feat = pyemma.coordinates.featurizer(pdb) feat.add_backbone_torsions(cossin=True, periodic=False) feat.add_sidechain_torsions(which='chi1', cossin=True, periodic=False)