markovmodel / PyEMMA

🚂 Python API for Emma's Markov Model Algorithms 🚂
http://pyemma.org
GNU Lesser General Public License v3.0
310 stars 119 forks source link

Remove msmtools #1555

Closed clonker closed 2 years ago

clonker commented 2 years ago

replaces calls to msmtools with calls to deeptime

codecov[bot] commented 2 years ago

Codecov Report

Merging #1555 (de97208) into devel (6d1f334) will increase coverage by 1.57%. The diff coverage is 96.54%.

@@            Coverage Diff             @@
##            devel    #1555      +/-   ##
==========================================
+ Coverage   90.37%   91.94%   +1.57%     
==========================================
  Files         229      229              
  Lines       26912    26629     -283     
==========================================
+ Hits        24321    24485     +164     
+ Misses       2591     2144     -447     
Impacted Files Coverage Δ
pyemma/coordinates/tests/test_traj_info_cache.py 93.75% <ø> (+74.71%) :arrow_up:
pyemma/coordinates/clustering/interface.py 88.09% <62.50%> (-1.17%) :arrow_down:
pyemma/datasets/double_well_discrete.py 86.04% <66.66%> (+4.65%) :arrow_up:
pyemma/msm/estimators/maximum_likelihood_msm.py 91.66% <71.42%> (ø)
pyemma/msm/estimators/maximum_likelihood_hmsm.py 88.88% <83.33%> (+0.27%) :arrow_up:
pyemma/thermo/extensions/cset.py 64.91% <83.33%> (ø)
pyemma/msm/models/pcca.py 91.30% <90.00%> (-1.92%) :arrow_down:
pyemma/msm/estimators/_dtraj_stats.py 79.48% <90.90%> (-4.54%) :arrow_down:
pyemma/_base/serialization/serialization.py 81.20% <100.00%> (+0.43%) :arrow_up:
pyemma/coordinates/tests/test_pca.py 99.37% <100.00%> (ø)
... and 52 more

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