Deprecations for coordinates api

[codecov[bot]]

Codecov Report

Merging #1557 (dfeeb07) into devel (d42e707) will increase coverage by 0.06%. The diff coverage is 94.44%.

@@            Coverage Diff             @@
##            devel    #1557      +/-   ##
==========================================
+ Coverage   91.88%   91.94%   +0.06%     
==========================================
  Files         229      229              
  Lines       26629    26642      +13     
==========================================
+ Hits        24468    24497      +29     
+ Misses       2161     2145      -16     

Impacted Files	Coverage Δ
pyemma/coordinates/clustering/assign.py	91.17% <ø> (ø)
pyemma/coordinates/clustering/kmeans.py	94.42% <ø> (ø)
pyemma/coordinates/clustering/regspace.py	94.59% <ø> (ø)
pyemma/coordinates/clustering/uniform_time.py	92.50% <ø> (ø)
pyemma/coordinates/pipelines.py	87.25% <ø> (ø)
pyemma/coordinates/transform/pca.py	94.35% <ø> (ø)
pyemma/coordinates/transform/tica.py	90.00% <ø> (ø)
pyemma/coordinates/transform/vamp.py	93.01% <ø> (ø)
pyemma/coordinates/estimation/covariance.py	85.00% <66.66%> (ø)
pyemma/coordinates/api.py	88.59% <100.00%> (+0.47%)	:arrow_up:
... and 4 more

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