search

markovmodel / PyEMMA

🚂 Python API for Emma's Markov Model Algorithms 🚂
http://pyemma.org
GNU Lesser General Public License v3.0
306 stars 119 forks source link

Basis of the active state fraction and active count fraction #1569

Closed Bazzinga18 closed 2 years ago

Bazzinga18 commented 2 years ago

Hello all, As a beginner i want to ask what is the criteria or the basis of calculating the active state fraction and active count fraction. how theses fraction comes 1?

clonker commented 2 years ago

To estimate a MSM all states need to be connected via observed transitions. So we subselect the largest connected set. Active state and count fraction are percentages expressing how many states (ie cluster centers) and how many transition counts are used in the model, respectively.

Bazzinga18 commented 2 years ago

THANK YOU SO MUCH