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markovmodel
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PyEMMA
🚂 Python API for Emma's Markov Model Algorithms 🚂
http://pyemma.org
GNU Lesser General Public License v3.0
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Koopman ignores dim setting
#1365
euhruska
opened
6 years ago
6
tica memory error
#1364
euhruska
closed
6 years ago
8
direct variational solver sometimes yields different sign structure
#1363
marscher
closed
6 years ago
6
Minor changes
#1362
marscher
closed
6 years ago
1
matplotlib related warnings
#1361
marscher
closed
6 years ago
1
Replace pybind with pkg
#1360
marscher
closed
6 years ago
1
Add new tutorial
#1359
marscher
closed
6 years ago
0
Black line/grey area in ITS plot
#1358
and-tos
closed
6 years ago
1
ImportError: No module named 'bar'
#1357
euhruska
closed
6 years ago
4
Include notebooks of the tutorial in documentation
#1356
marscher
closed
6 years ago
1
[clustering] use double dtype for euclidean sum
#1355
marscher
closed
6 years ago
0
Saving features in file
#1354
and-tos
closed
6 years ago
4
Refactoring pyemma.plots.markovtests.py
#1353
cwehmeyer
opened
6 years ago
0
how to ?
#1352
naveenmeena584
closed
6 years ago
17
covariance matrices as input for tica
#1351
euhruska
closed
5 years ago
4
fix koopman bug
#1350
euhruska
closed
5 years ago
1
koopman bug and fix
#1349
euhruska
closed
5 years ago
1
cluster_mini_batch_kmeans error isfinite(sum) failed
#1348
euhruska
closed
6 years ago
2
kmeans speed up
#1347
euhruska
closed
6 years ago
4
Assertion `omp_get_num_threads() == n_threads' failed for KmeansClustering
#1346
euhruska
closed
6 years ago
2
thermo support for metadynamics
#1345
liyigerry
closed
5 years ago
2
Progress bar effective counting
#1344
marscher
closed
6 years ago
0
Fix connected sets for Bayesian MSMs
#1343
marscher
closed
6 years ago
0
Confidence interval for constant data warning
#1342
thempel
closed
2 years ago
4
Wanted: show_progress parameter in coordinates and thermo api functions
#1341
cwehmeyer
opened
6 years ago
0
[plots1d] mask zero-counts in logscale feature histogram
#1340
thempel
closed
6 years ago
1
[kmeans] only show progress for creating data array, if src is not in memory.
#1339
marscher
closed
6 years ago
2
plots2d_cbar
#1338
cwehmeyer
closed
6 years ago
4
[appyevor] use miniconda 3.6 as base and rely on CONDA_PY
#1337
marscher
closed
6 years ago
2
Allow zorder in plots2d
#1336
cwehmeyer
closed
6 years ago
3
[plots] plot_state_map
#1335
thempel
closed
6 years ago
2
[plots] zorder parameter
#1334
thempel
closed
6 years ago
2
[plots] accept coordinates DataSource as input
#1333
marscher
closed
4 years ago
1
computation of chunksize ignores memory heavy computations in featurizer
#1332
marscher
closed
4 years ago
1
Added missing parameter ncontours=100 to plot_state_map()
#1331
cwehmeyer
closed
6 years ago
0
Cktest parallel
#1330
marscher
closed
6 years ago
1
[param-scan] obtain a value for n_jobs=None like in the NJobsMixin
#1329
marscher
closed
6 years ago
0
cktest of a bayesian msm breaks down for n_jobs=None
#1328
cwehmeyer
closed
6 years ago
1
Clustering returns 0 structures for a highly populated region of the free energy landscape
#1327
eric-jm-lang
closed
6 years ago
11
[msm tests] hard-code submodel test dtraj
#1326
thempel
closed
6 years ago
1
maintainence stuff
#1325
marscher
closed
6 years ago
1
HMM submodels
#1324
thempel
closed
3 years ago
3
HMM submodel fix
#1323
thempel
closed
6 years ago
0
[Serialization] proper error on non existent model
#1322
marscher
closed
6 years ago
1
How to avoid 'artificial' transitions when analysing a set a simulations with some starting from one state and some starting from another
#1321
eric-jm-lang
closed
6 years ago
2
[config] cache values
#1320
marscher
closed
6 years ago
0
[recipes] unpin numpy, fix versioning
#1319
marscher
closed
6 years ago
4
Update circleci to api v2.0
#1318
marscher
closed
6 years ago
0
Refactor plots2d
#1317
cwehmeyer
closed
6 years ago
8
release schedule
#1316
marscher
closed
6 years ago
1
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