search

markovmodel / adaptivemd

A python framework to run adaptive Markov state model (MSM) simulation on HPC resources
GNU Lesser General Public License v2.1
18 stars 7 forks source link

Simple test in README.md does not work #53

Open eblen opened 7 years ago

eblen commented 7 years ago

The simple test in the README doesn't work:

run a simple test

cd adaptive/tests/ python test_simple.py

1) The directory name is wrong. It should be 'adaptivemd/tests/' 2) The MongoDB database has to be running, which is not mentioned. 3) It generates an assertion error:

(python2) macbook>python ./test_simple.py changed state to booting changed state to running task succeeded removing worker dir Traceback (most recent call last): File "./test_simple.py", line 89, in assert(os.path.exists(traj_path)) AssertionError

jhprinz commented 7 years ago

PR #55 addresses the failing example. The README still need to be updated.

jhprinz commented 7 years ago

Thanks for checking.