Closed cwehmeyer closed 5 years ago
I tested the installer as recommended in the article:
conda create -n pyemma_tutorials conda activate pyemma_tutorials conda install -c conda-forge pyemma_tutorials pyemma_tutorials
This worked perfectly well until I ran the first notebook. It seems that the notebooks/static/ directory is missing which contains seven png files:
notebooks/static/
--------------------------------------------------------------------------- FileNotFoundError Traceback (most recent call last) <ipython-input-40-52a99d5350ed> in <module>() 16 ax_mol = fig.add_subplot(gs[:1600, -2820:-400]) 17 ax_mol.set_axis_off() ---> 18 ax_mol.imshow(plt.imread('static/pentapeptide-structure.png')) 19 20 ax_feat = fig.add_subplot(gs[2000:3150, 400:1800]) /group/ag_cmb/scratch/schiffm/miniconda/envs/pyemma_tutorials/lib/python3.6/site-packages/matplotlib/pyplot.py in imread(*args, **kwargs) 2371 @docstring.copy_dedent(_imread) 2372 def imread(*args, **kwargs): -> 2373 return _imread(*args, **kwargs) 2374 2375 /group/ag_cmb/scratch/schiffm/miniconda/envs/pyemma_tutorials/lib/python3.6/site-packages/matplotlib/image.py in imread(fname, format) 1374 return handler(fd) 1375 else: -> 1376 with open(fname, 'rb') as fd: 1377 return handler(fd) 1378 else: FileNotFoundError: [Errno 2] No such file or directory: 'static/pentapeptide-structure.png'
Thanks for testing again, I will include these subdirectories.
I tested the installer as recommended in the article:
This worked perfectly well until I ran the first notebook. It seems that the
notebooks/static/
directory is missing which contains seven png files: