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markovmodel / pyemma_tutorials

How to analyze molecular dynamics data with PyEMMA
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chapman-kolmogorov test Error #196

Closed sundelinllnl closed 5 years ago

sundelinllnl commented 5 years ago

Hi, pyemma developers,

I am following the pyemma tutorials for the pentapeptide and I encountered errors at the CK test step, with the following error message: "m = self._D.shape[0] # this will raise and exception if self._D doesn't exist yet. AttributeError: 'BayesianMSM' object has no attribute '_D'"

So, how to solve this problem.

Thanks Delin

marscher commented 5 years ago

cross-posted markovmodel/pyemma#1416, fixed by markovmodel/pyemma#1418

omkantnirala commented 1 month ago

Hello pyEMMA Team, I am getting this Error after running below code. "nstates = 5 cktest = msm.cktest(nstates, mlags=6) pyemma.plots.plot_cktest(cktest, dt=0.1, units='ns');" Please tell me how can i fix it?

AttributeError Traceback (most recent call last) Cell In[34], line 2 1 nstates = 5 ----> 2 cktest = msm.cktest(nstates, mlags=6) 3 pyemma.plots.plot_cktest(cktest, dt=0.1, units='ns');

AttributeError: module 'pyemma.msm' has no attribute 'cktest'