markowetzlab scDNAseq-workflow issues

markowetzlab / scDNAseq-workflow

calling absolute copy numbers on single cell DNA sequencing data - stagging repo for public release

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issues

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pseudodiploid/haploid cells as output

#27 Urja25 opened 1 month ago
14
No text editors installed in the scAbsolute image

#26 TBradley27 closed 1 month ago
2
scUnique segmentation sensitivity

#25 annahyan closed 4 months ago
3
MissingOutputException in rule scale_scAbsolute

#24 annahyan closed 4 months ago
2
Vignette

#23 leachim closed 5 months ago
0
Support for hg38

#22 annahyan closed 5 months ago
8
Instruction/control of read duplicate marking

#21 TBradley27 closed 5 months ago
2
MissionBio Tapestri

#20 EspressoKris closed 6 months ago
0
Release upon scUnique publication

#19 leachim closed 6 months ago
1
add a flag to turn on/off density computation

#18 leachim closed 6 months ago
0
add aws to requirements to access public aws registry

#17 leachim closed 6 months ago
0
remove X and Y chromsomes by default from analysis - not reliable for rCNA

#16 leachim closed 6 months ago
0
Input requirements

#15 leachim closed 6 months ago
1
Fix discrepancy paths

#14 leachim closed 6 months ago
0
Publish docker code

#13 leachim closed 6 months ago
0
Add tutorial for scUnique paper

#12 leachim closed 6 months ago
0
Test this on snakemake v8.0.0

#11 leachim closed 6 months ago
1
Devel

#10 shafighi closed 7 months ago
0
Unresolved merge conflicts in the default/main branch

#9 TBradley27 closed 9 months ago
6
Adjust workflow for optional mouse compatibility

#8 AustinReed-1 closed 7 months ago
2
running scAbsolute

#7 ljwharbers closed 9 months ago
5
How do I run the snakemake for mm10 genome?

#6 Urja25 closed 7 months ago
2
scRNAseq data?

#5 sunliang3361 closed 1 year ago
2
Improve error handling

#4 leachim closed 1 year ago
0
Improve snakemake

#3 leachim closed 9 months ago
0
Minor bugs

#2 leachim closed 1 year ago
0
Small type on samtools image

#1 p-smirnov closed 1 year ago
1