Anaconda Cloud has provided the method for installing your package into a conda environment (https://anaconda.org/bioconda/bioconductor-crisprvariants).
So, I typed conda install -c bioconda bioconductor-crisprvariants to install CrispRVariants into my conda environment. However, it was failed due to "UnsatisfiableError".
And also, the alternative commands:
conda install -c bioconda/label/gcc7 bioconductor-crisprvariantsconda install -c bioconda/label/cf201901 bioconductor-crisprvariants
were unavailable because of the same reason.
I remember that I could install it in the above way last year. But, it cannot work now.
Steps to Reproduce
$ conda create -n trial_env; # Create a new visual environment using conda
Collecting package metadata (current_repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /Users/xxxxx/opt/anaconda3/envs/trial_env
Proceed ([y]/n)? y
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate trial_env
#
# To deactivate an active environment, use
#
# $ conda deactivate
$ source activate trial_env; # Activate the environment
# Install CrispRVariants package according to the explanation of Anaconda Cloud.
(trial_env) $ conda install -c bioconda bioconductor-crisprvariants;
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: \
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Package r-base conflicts for:
bioconductor-crisprvariants -> r-base[version='3.4.1.*|>=3.5.1,<3.5.2.0a0|>=3.6,<3.7.0a0']
Package r-gridextra conflicts for:
bioconductor-crisprvariants -> r-gridextra
Package bioconductor-biostrings conflicts for:
bioconductor-crisprvariants -> bioconductor-biostrings[version='>=2.48.0,<2.50.0|>=2.50.0,<2.51.0|>=2.52.0,<2.53.0|>=2.54.0,<2.55.0']
Package bioconductor-s4vectors conflicts for:
bioconductor-crisprvariants -> bioconductor-s4vectors[version='>=0.18.3,<0.20.0|>=0.20.0,<0.21.0|>=0.22.0,<0.23.0|>=0.24.0,<0.25.0|>=0.9.38']
Package r-reshape2 conflicts for:
bioconductor-crisprvariants -> r-reshape2
Package bioconductor-iranges conflicts for:
bioconductor-crisprvariants -> bioconductor-iranges[version='>=2.14.12,<2.16.0|>=2.16.0,<2.17.0|>=2.18.0,<2.19.0|>=2.20.0,<2.21.0']
Package bioconductor-genomicranges conflicts for:
bioconductor-crisprvariants -> bioconductor-genomicranges[version='>=1.32.7,<1.34.0|>=1.34.0,<1.35.0|>=1.36.0,<1.37.0|>=1.38.0,<1.39.0']
Package r-ggplot2 conflicts for:
bioconductor-crisprvariants -> r-ggplot2[version='>=2.2.0']
Package bioconductor-genomicalignments conflicts for:
bioconductor-crisprvariants -> bioconductor-genomicalignments[version='>=1.16.0,<1.18.0|>=1.18.0,<1.19.0|>=1.20.0,<1.21.0|>=1.22.0,<1.23.0']
Package bioconductor-biocparallel conflicts for:
bioconductor-crisprvariants -> bioconductor-biocparallel[version='>=1.14.2,<1.16.0|>=1.16.0,<1.17.0|>=1.18.0,<1.19.0|>=1.20.0,<1.21.0']
Package bioconductor-genomeinfodb conflicts for:
bioconductor-crisprvariants -> bioconductor-genomeinfodb[version='>=1.16.0,<1.18.0|>=1.18.0,<1.19.0|>=1.20.0,<1.21.0|>=1.22.0,<1.23.0']
Package bioconductor-annotationdbi conflicts for:
bioconductor-crisprvariants -> bioconductor-annotationdbi[version='>=1.42.1,<1.44.0|>=1.44.0,<1.45.0|>=1.46.0,<1.47.0|>=1.48.0,<1.49.0']
Package bioconductor-rsamtools conflicts for:
bioconductor-crisprvariants -> bioconductor-rsamtools[version='>=1.32.3,<1.34.0|>=1.34.0,<1.35.0|>=2.0.0,<2.1.0|>=2.2.0,<2.3.0']
Expected Behavior
Installation should be done without any error messages. CrispRVariants package can be available in R.
Hello,
Anaconda Cloud has provided the method for installing your package into a conda environment (https://anaconda.org/bioconda/bioconductor-crisprvariants). So, I typed
conda install -c bioconda bioconductor-crisprvariants
to install CrispRVariants into my conda environment. However, it was failed due to "UnsatisfiableError".And also, the alternative commands:
conda install -c bioconda/label/gcc7 bioconductor-crisprvariants
conda install -c bioconda/label/cf201901 bioconductor-crisprvariants
were unavailable because of the same reason.I remember that I could install it in the above way last year. But, it cannot work now.
Steps to Reproduce
Expected Behavior
Installation should be done without any error messages. CrispRVariants package can be available in R.
Environment Information
`conda info`
`conda config --show-sources`