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marksgraham / OCT-Converter

Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
https://pypi.org/project/oct-converter/
MIT License
193 stars 70 forks source link

Problem about read edb, sdb, and pdb files #133

Closed DENGBOYU-REX closed 8 months ago

DENGBOYU-REX commented 8 months ago

Hi, I am currently using the e2e to read edb, sdb, and pdb files. I can retrieve an image from the sdb file, but I am unable to fetch data from the others, following the example provided by example. Is the problem about files or any other issue? I use oct_converter==0.6.2 The sample data can be found in https://drive.google.com/drive/folders/1-4wXFUaqJf9aAVCfGpesaXPvEUIvRxhC?usp=sharing Thanks!!!

marksgraham commented 8 months ago

Hi there,

I think its a file issue. The reader was only designed to read .e2e files and has never been tested on .sdb/.pdb - I'm surprised it extracts any images at all from .sdb!

DENGBOYU-REX commented 8 months ago

Hi there,

I think its a file issue. The reader was only designed to read .e2e files and has never been tested on .sdb/.pdb - I'm surprised it extracts any images at all from .sdb!

Thanks a lot for your help @marksgraham!!! All I have been told is that the file is in 'Heidelberg' format, so I am trying to use E2E to read it, seems like I need to find another way to solve it.