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marksgraham
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OCT-Converter
Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
https://pypi.org/project/oct-converter/
MIT License
193
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70
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Reading E2E, memory error
#91
marksgraham
closed
1 year ago
0
Made Improvments On fda_testing.py, oct.py, fda.py
#89
furkantrky
closed
1 year ago
3
Commit Request
#88
furkantrky
closed
1 year ago
2
Adds precommit action
#87
marksgraham
closed
1 year ago
0
Roadmap and development ideas
#86
marksgraham
opened
1 year ago
14
changes on fda.py
#85
furkantrky
closed
1 year ago
5
Commit For FDA Files
#84
furkantrky
closed
1 year ago
2
Stream Error when reading E2E file
#83
SaeedShurrab
closed
1 year ago
16
finish splitting out binary structures from readers
#82
Dbrown411
closed
1 year ago
1
Read Zeissdicom OCTA
#81
marksgraham
closed
1 year ago
0
fix bug with linear scans
#80
Dbrown411
closed
1 year ago
2
Cannot read Zeiss Dicom OCTA scans
#78
xycyx
closed
1 year ago
4
decode error when opening a .oct image: UnicodeDecodeError: 'utf-8' codec can't decode byte 0xe4 in position 66: invalid continuation byte
#77
kli30
closed
1 year ago
9
Fixes numpy int conversion for np>=1.24
#76
marksgraham
closed
1 year ago
0
oct_volume.peek() doesnt work with numpy 1.24
#75
Atif-Anwer
closed
1 year ago
3
Adding support for custom slice dimension in Zeiss .img files
#74
Atif-Anwer
closed
1 year ago
3
Image upload
#73
marksgraham
closed
1 year ago
0
Adds ability to read Zeiss' obfuscated Dicom format
#72
marksgraham
closed
1 year ago
0
fda example bug
#71
wx-guyue
closed
1 year ago
5
How to get OCTA from fda file
#70
pomeloyy
closed
1 year ago
1
Unable to decode the data
#69
HuseyinVisea
closed
1 year ago
2
Error with E2E file extraction
#68
MervThom
closed
1 year ago
4
StreamError when converting .oct files
#67
gxg2002cn
closed
1 year ago
2
Get layer positions from bscan metadata
#66
jh88
closed
1 year ago
8
No module named 'oct_converter.readers.zeissdcm'
#63
alanwilter
closed
2 years ago
6
Extract acquisition date from .e2e files
#62
marksgraham
closed
2 years ago
0
Read contour data from .e2e files
#61
jh88
closed
2 years ago
1
Acquisition Date for .e2e files
#58
rubeenmp
closed
2 years ago
7
The width and height of the image file are different
#56
koon-kai
closed
2 years ago
4
Resizing fix
#55
marksgraham
closed
2 years ago
0
Fixes #53
#54
marksgraham
closed
2 years ago
0
Error while extracting OCT images from E2E format
#53
NK-qub
closed
2 years ago
7
fda.read_oct_volume gives No decoders are available error
#52
YaseminTurkan
closed
2 years ago
7
Fixing Issue #50
#51
orenavram
closed
2 years ago
0
".fromstring" method in e2e.py generates warnings with possible downstream consequences
#50
orenavram
closed
2 years ago
4
Errors about converting .oct to .img
#49
daydream-noquitter
closed
2 years ago
2
Update fda.py to get all locations for a tag
#48
working-girl
closed
2 years ago
0
pathlib is already in Python since 3.4
#47
alanwilter
closed
2 years ago
1
improper use of PaddedString in laterality data structure replaced w/ uint8
#46
Dbrown411
closed
2 years ago
8
laterality is not properly extracted from e2e files
#45
Dbrown411
closed
2 years ago
0
Use unique names for magic string fields
#44
camlloyd
closed
2 years ago
0
pdb, sdb, edb file format to image
#43
niloofarAzari
closed
2 years ago
2
0.2 version not available via pip
#42
ValentinKoch
closed
2 years ago
0
Conversion for Heidelberg Spectralis??
#41
steffejr
closed
2 years ago
4
Issue when converting single image Dicom
#40
yehudahkay
closed
1 year ago
8
Dev e2e loading optimization
#37
Dbrown411
closed
3 years ago
3
Dev bioptigen
#36
Dbrown411
closed
3 years ago
1
Updated oct.py to normalize output 0-255
#35
dkermany
closed
3 years ago
1
Pixel distribution in fda files
#32
antoniohupa
closed
1 year ago
4
Error while opening E2E files
#31
JosefKauer
closed
1 year ago
9
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