Practical guides

[markziemann]

https://github.com/markziemann/5pillars/blob/41bb93e261a92a6c518cfdd82f3e2246cac1669b/guides/practical_guides.Rmd#LL58C1-L62C18

Hi @anusuiyaxbora I'm putting together a document containing some helpful links for folks wanting to implement the 5 pillars aproach so we can point them to these resources to get started. I'm looking for tutorials, methods, videos and articles for the following:

• Intro to R and Rstudio (2-3 items)
• Intro to Python and iPython IDE (2-3 items)
• Intro to vscode (2-3 items)

[anusuiyaxbora]

Hello, Are you looking for published books for these or will websites also work? 1) I saw https://r4ds.had.co.nz/ this guide getting promoted on Twitter.

2) The "Data Analysis with R Specialization" course by Duke University in Coursera can be studied, financial aid option can be used to get certified.

Some other links are:

3) https://learningstatisticswithr.com/

4) https://bookdown.org/ndphillips/YaRrr/ (I think that this will be helpful!)

[markziemann]

Yes that's great. Websites and ebooks are perfect. I will add these to the guide. Can you also find intro to rstudio, python and vscode? Thanks

[markziemann]

Hey @anusuiyaxbora I've populated some guides in the latest commit. Could you take a look here: https://ziemann-lab.net/public/5pillars/practical_guides.html And let me know whether you approve of these sources.

Also could you add these links to The Internet Archive? https://archive.org/web/ Submit the links to the "Save Page Now". Thanks

[anusuiyaxbora]

Yes definitely, I will check the links and will add them to the archive. Will send in new links that I think are useful for the rest of the topics!

[pierrepo]

Hey @markziemann and @anusuiyaxbora More resources if you need:

Snakemake:

• Reproducible data analysis with Snakemake, vidéo, with Johannes Köster (creator of Snakemake)
• Understanding Snakemake, blog post, by Vince Buffalo. Compares Make with Snakemake.
• Using snakemake to do simple wildcard operations on many, many, many files, blog post, by Titus Brown. Starts from a Bash script and gradually moves to a Snakemake script.

Git:

• Git and GitHub for Beginners - Crash Course. 1-hour video course on git and GitHub by Gwen Faraday. Covers pretty much everything.
• Git Basics. A set of 4 small videos on git.
• Git for Humans. Introductory presentation for git
• Version Control with Git, Software Carpentry tutorial.

Git + VScode:

• Using Version Control in VS Code. VScode documentation.

Git + RStudio:

• Reproducible workflow and version control with Git and Github
• Happy Git and GitHub for the useR

[markziemann]

Thanks @pierrepo! These are great resources. @anusuiyaxbora can you add these to guides/practical_guides.Rmd?

Snakemake materials go under the "end-to-end process" subheading. The ones related to git go under the git/github subheading.

Article is nearly ready to go.

[anusuiyaxbora]

Yes, I will add the new links that were suggested!

[anusuiyaxbora]

Hello @markziemann I have added the additional links to the Rmd file. All the links have been saved on The Internet Archive as well!

Just some queries:

1. Can you please once check if the "Introduction to Using Git in Jupyter" (https://andgarc.github.io/basic-git-jupyter-lesson/index.html) link got repeated under the "practical guides for git and github" section...

2. Is the 3rd link under the "Practical guides to data sharing" heading working? Maybe https://zenodo.org/record/3518692 this link would be better?

3. Will this link be useful as part of the list of guides? "Running Basic Statistical Analysis in R" - https://www.youtube.com/watch?v=I6FJo8x1wZE

[markziemann]

Thanks @anusuiyaxbora for adding those materials. I have addressed the 3 points you raised and will close the issue.