markziemann / SurveyEnrichmentMethods

A survey of enrichment analysis methods
http://ziemann-lab.net/public/kaumadi/manuscript.html
MIT License
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Wordcloud example #4

Closed markziemann closed 3 years ago

markziemann commented 3 years ago

Hey Kaumadi,

Here is the example I modified: https://towardsdatascience.com/create-a-word-cloud-with-r-bde3e7422e8a

Here is the code to make a word cloud. For this example I needed to modify the names so it would work properly for gene expression array. Your other columns might need adjustment as well.

library("wordcloud")
library("RColorBrewer")
library("wordcloud2")
par(mar=c(1,1,1,1))
names(res) <- gsub("Gene expression array","RNA array",names(res))
wordcloud(words = names(res), freq = res, min.freq = 1,
    max.words=200, random.order=FALSE, rot.per=0.35, 
    colors=brewer.pal(8, "Dark2"))

image