search

markziemann / dee2

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
http://dee2.io
GNU General Public License v3.0
39 stars 7 forks source link

Too much output text #16

Closed markziemann closed 6 years ago

markziemann commented 6 years ago

The pipeline should by default run more quietly and only provide basic info (preparing index, start dataset, completed dataset). Verbosity level should be optioned.

markziemann commented 6 years ago

The bash debug mode has been implemented as optional which is working well. This has reduced the level of chatter but there is still of lot of text being tee'd or sterr'd to the screen which will need to be cut down significantly.

I will be looking at options to control stderr, maybe a makefile approach could be useful.

markziemann commented 6 years ago

I have reduced the amount of needless output text. The -V flag can be used to increase verbosity. The changes are currently in the dev branch and will be merged soon.