x2$QC_summary<-unlist(lapply(x2$SRR_accession , qc_analysis, org=org))
Error in read.table(QCFILE, stringsAsFactors = F) :
no lines available in input
In addition: Warning messages:
1: In FUN(X[[i]], ...) : NAs introduced by coercion
2: In FUN(X[[i]], ...) : NAs introduced by coercion
3: In FUN(X[[i]], ...) : NAs introduced by coercion
Function causing the error:
qc_analysis
Command causing the error:
read.table(QCFILE, stringsAsFactors = F)
If the file is empty, then the rea.table barfs and causes downstream problems.
x2$QC_summary<-unlist(lapply(x2$SRR_accession , qc_analysis, org=org)) Error in read.table(QCFILE, stringsAsFactors = F) : no lines available in input In addition: Warning messages: 1: In FUN(X[[i]], ...) : NAs introduced by coercion 2: In FUN(X[[i]], ...) : NAs introduced by coercion 3: In FUN(X[[i]], ...) : NAs introduced by coercion
Function causing the error: qc_analysis
Command causing the error: read.table(QCFILE, stringsAsFactors = F)
If the file is empty, then the rea.table barfs and causes downstream problems.