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markziemann / dee2

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
http://dee2.io
GNU General Public License v3.0
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Integration with Degust #55

Closed markziemann closed 5 years ago

markziemann commented 5 years ago

GeneCountMatrices can be automatically sent to degust with this code

TOKEN=$(curl -b cookies.txt -c cookies.txt 'http://degust.erc.monash.edu/upload' | sort | grep 'name="authenticity_token"' | cut -d '"' -f8) ; echo $TOKEN ; curl -b cookies.txt -v -L 'http://degust.erc.monash.edu/upload' -F "authenticity_token=$TOKEN" -F 'filename=@/home/mdz/Downloads/GeneCountMatrix.tsv' 2> tmp ; grep -m1 'http://degust.erc.monash.edu/degust/compare.html?code=' tmp | cut -d ' ' -f3

markziemann commented 5 years ago

In the most recent update a new submit button allows users to send the STAR count matrix to Degust