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markziemann / mitch_legacy

An R package for multi-dimensional pathway enrichment analysis (legacy repo)
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Handling NAs in manova analysis #67

Closed markziemann closed 5 years ago

markziemann commented 5 years ago

In the muscat example there are genesets with NAs for s.dist but small p-values

markziemann commented 5 years ago

it seems that colsums and sum were implemented with the default NA handling which gave NA result. it has been modified to na.rm = TRUE where possible